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L3_128_054G1_scaffold_141

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_128_054G1_scaffold_141_1
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3..335
DNA (333bp) protein (111aa)
Uncharacterized protein n=2 Tax=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) RepID=B7GUS3_BIFLS
putative transposase
Uncharacterized protein {ECO:0000313|EMBL:ACJ53219.1}; TaxID=391904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088; / JCM 1222 / NCTC 11817 / S12).;"
L3_128_054G1_scaffold_141_2
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

382..687
DNA (306bp) protein (102aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
tyrS; tyrosine--tRNA ligase (EC:6.1.1.1)
Tyrosine--tRNA ligase n=4 Tax=Bifidobacterium breve RepID=F6CA98_BIFBA
L3_128_054G1_scaffold_141_3
Bifidobacterium callitrichos, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

765..1964
DNA (1200bp) protein (400aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WIF0_BIFBI
Helicase {ECO:0000313|EMBL:KFI51297.1}; TaxID=1437609 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium callitrichos DSM 23973.;"
Hypothetical protein
L3_128_054G1_scaffold_141_4
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1961..2959
DNA (999bp) protein (333aa)
HAD hydrolase, family IIA n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2E2T5_BIFBR
Haloacid dehalogenase-like hydrolase (HAD superfamily)
HAD hydrolase, family IIA {ECO:0000313|EMBL:ERI88452.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
L3_128_054G1_scaffold_141_5
Bifidobacterium pullorum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2931..3716
DNA (786bp) protein (262aa)
FtsJ-like methyltransferase domain {ECO:0000313|EMBL:KFI83704.1}; EC=2.1.1.226 {ECO:0000313|EMBL:KFI83704.1};; EC=2.1.1.227 {ECO:0000313|EMBL:KFI83704.1};; TaxID=78448 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pullorum.;"
Putative ribosomal RNA large subunit methyltransferase J n=1 Tax=Bifidobacterium angulatum DSM 20098 = JCM 7096 RepID=C4FFV7_9BIFI
Hemolysin-like protein with S4 and FtsJ-like methyltransferase domains
L3_128_054G1_scaffold_141_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3740..4399)
DNA (660bp) protein (220aa)
TrkA family potassium uptake protein n=7 Tax=Bifidobacterium RepID=E4NXC8_BIFBP
hypothetical protein
Potassium uptake protein {ECO:0000313|EMBL:EKF14886.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_128_054G1_scaffold_141_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4447..5910)
DNA (1464bp) protein (488aa)
Cation transporter n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ER10_BIFBS
cation transporter
Cation transporter {ECO:0000313|EMBL:ADO53282.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_128_054G1_scaffold_141_8
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6055..6582
DNA (528bp) protein (176aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
Probable inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BTS1_9BIFI
inorganic polyphosphate kinase
L3_128_054G1_scaffold_141_9
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6716..7588)
DNA (873bp) protein (291aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve HPH0326 RepID=S2ZDF7_BIFBR
Uncharacterized protein {ECO:0000313|EMBL:EPD74753.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
Hypothetical protein
L3_128_054G1_scaffold_141_10
Atopobium sp. ICM42b, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(7641..8570)
DNA (930bp) protein (310aa)
MacB-like periplasmic core domain protein n=1 Tax=Coriobacteriaceae bacterium BV3Ac1 RepID=U2VBU4_9ACTN
MacB-like periplasmic core domain protein {ECO:0000313|EMBL:EWC96050.1}; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;"
hypothetical protein
L3_128_054G1_scaffold_141_11
Bifidobacterium pullorum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8638..8949)
DNA (312bp) protein (104aa)
Alkaline phosphatase {ECO:0000313|EMBL:KFI80813.1}; EC=3.1.3.1 {ECO:0000313|EMBL:KFI80813.1};; TaxID=78448 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pullorum.;"
Alkaline phosphatase n=1 Tax=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC 11814 / E194a) RepID=A1A3P6_BIFAA
alkaline phosphatase
L3_128_054G1_scaffold_141_12
Bifidobacterium gallinarum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9131..10135)
DNA (1005bp) protein (335aa)
LacI family transcriptional regulator n=1 Tax=Bifidobacterium pseudolongum RepID=UPI0003B44595
LacI-type transcriptional regulator {ECO:0000313|EMBL:KFI60612.1}; TaxID=78344 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium gallinarum.;"
transcriptional regulator
L3_128_054G1_scaffold_141_13
Bifidobacterium gallinarum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10627..12015
DNA (1389bp) protein (463aa)
sugar ABC transporter substrate-binding protein n=1 Tax=Bifidobacterium pseudolongum RepID=UPI0003B4505F
ABC transporter, solute-binding protein {ECO:0000313|EMBL:KFI60611.1}; TaxID=78344 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium gallinarum.;"
lactose ABC transporter substrate-binding protein
L3_128_054G1_scaffold_141_14
Bifidobacterium gallinarum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12031..12963
DNA (933bp) protein (311aa)
ABC transporter permease n=1 Tax=Bifidobacterium pseudolongum RepID=UPI0003B4125D
ABC transporter permease {ECO:0000313|EMBL:KFI60610.1}; TaxID=78344 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium gallinarum.;"
sugar ABC transporter substrate-binding protein
L3_128_054G1_scaffold_141_15
Bifidobacterium pullorum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12965..13792
DNA (828bp) protein (276aa)
sugar ABC transporter permease n=1 Tax=Bifidobacterium pseudolongum RepID=UPI0003B77C8D
Sugar ABC transporter, permease-like protein {ECO:0000313|EMBL:KFI80811.1}; TaxID=78448 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pullorum.;"
sugar ABC transporter permease
L3_128_054G1_scaffold_141_16
Bifidobacterium gallinarum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14147..16699
DNA (2553bp) protein (851aa)
Alpha-glucosidase {ECO:0000313|EMBL:KFI60608.1}; EC=3.2.1.177 {ECO:0000313|EMBL:KFI60608.1};; TaxID=78344 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium gallinarum.;"
Alpha-glucosidase n=1 Tax=Bifidobacterium longum subsp. longum KACC 91563 RepID=F8AU83_BIFLN
alpha-glucosidase
L3_128_054G1_scaffold_141_17
Youngiibacter fragilis, Youngiibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16563..18014)
DNA (1452bp) protein (484aa)
Transposase n=1 Tax=Youngiibacter fragilis 232.1 RepID=V7I9E8_9CLOT
Transposase {ECO:0000313|EMBL:ETA81929.1}; TaxID=994573 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Youngiibacter.;" source="Youngiibacter fragilis 232.1.;"
transposase
L3_128_054G1_scaffold_141_18
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18131..18610
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. longum ATCC 55813 RepID=C2GY05_BIFLN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIW44428.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L3_128_054G1_scaffold_141_19
unknown

Not on your lists

comp(18804..19055)
DNA (252bp) protein (84aa)

This feature has no annotations

L3_128_054G1_scaffold_141_20
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19330..19764)
DNA (435bp) protein (145aa)
Histidine kinase A n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZX67_BIFLJ
histidine kinase A
Histidine kinase A {ECO:0000313|EMBL:ADG99513.1}; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
L3_128_054G1_scaffold_141_21
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20385..20477
DNA (93bp) protein (31aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. longum ATCC 55813 RepID=C2GY06_BIFLN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIW44427.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L3_128_054G1_scaffold_141_22
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20526..21722)
DNA (1197bp) protein (399aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZX65_BIFLJ
Uncharacterized protein {ECO:0000313|EMBL:KFI67989.1}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
hypothetical protein
L3_128_054G1_scaffold_141_23
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22233..23579)
DNA (1347bp) protein (449aa)
Aminotransferase, class I and II n=2 Tax=Bifidobacterium longum subsp. longum RepID=D6ZX64_BIFLJ
class I and II aminotransferase
Class I and II aminotransferase {ECO:0000313|EMBL:AEI98451.1}; TaxID=1035817 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum KACC 91563.;"
L3_128_054G1_scaffold_141_24
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23785..24219
DNA (435bp) protein (145aa)
Transcriptional regulator n=19 Tax=Bifidobacterium RepID=B3DP12_BIFLD
transcriptional regulator
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:CBK71341.1}; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
L3_128_054G1_scaffold_141_25
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24610..25956
DNA (1347bp) protein (449aa)
Glutamate dehydrogenase n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZX62_BIFLJ
glutamate dehydrogenase
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
L3_128_054G1_scaffold_141_26
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26301..27722)
DNA (1422bp) protein (474aa)
Uncharacterized protein n=3 Tax=Bacteria RepID=Q8G6K9_BIFLO
AAA+ superfamily ATPase
Putative AAA+ superfamily ATPase {ECO:0000313|EMBL:ACD98874.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L3_128_054G1_scaffold_141_27
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28554..29120)
DNA (567bp) protein (189aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZX60_BIFLJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG99506.1}; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
L3_128_054G1_scaffold_141_28
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(29190..31841)
DNA (2652bp) protein (884aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
DNA gyrase subunit A n=2 Tax=Bifidobacterium longum subsp. longum RepID=I3ARA5_BIFLN
DNA gyrase subunit A
L3_128_054G1_scaffold_141_29
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31909..34047)
DNA (2139bp) protein (713aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B n=2 Tax=Bifidobacterium longum subsp. longum RepID=C2GY33_BIFLN
L3_128_054G1_scaffold_141_30
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(34180..34650)
DNA (471bp) protein (157aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZX57_BIFLJ
hypothetical protein
Zn-ribbon-containing RNA-binding protein {ECO:0000313|EMBL:KFI73212.1}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
Displaying items 1-30 of 43 in total

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