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L3_128_070G1_scaffold_110

Search features with annotation key words

Displaying items 1-30 of 73 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_128_070G1_scaffold_110_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..820
DNA (819bp) protein (273aa)
Putative N-acetylmuramoyl-L-alanine amidase,autolysin cwp17 {ECO:0000313|EMBL:CAJ67877.2}; EC=3.5.1.28 {ECO:0000313|EMBL:CAJ67877.2};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
N-acetylmuramoyl-L-alanine amidase family protein n=1 Tax=Clostridium difficile DA00126 RepID=T3M0V4_CLODI
N-acetylmuramoyl-L-alanine amidase
L3_128_070G1_scaffold_110_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1062..2975
DNA (1914bp) protein (638aa)
Uncharacterized protein n=2 Tax=Clostridium difficile RepID=T4PQY4_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQG77939.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
hypothetical protein
L3_128_070G1_scaffold_110_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2968..5187
DNA (2220bp) protein (740aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
UvrD/REP helicase N-terminal domain protein n=30 Tax=Clostridium difficile RepID=T2XPX0_CLODI
putative helicase, superfamily 1, UvrD-family
L3_128_070G1_scaffold_110_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5296..6126
DNA (831bp) protein (277aa)
PD-(D/E)XK nuclease superfamily protein n=78 Tax=Clostridium difficile RepID=C9XND4_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL29116.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_128_070G1_scaffold_110_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6116..9583
DNA (3468bp) protein (1156aa)
ATP-dependent helicase/deoxyribonuclease subunit B {ECO:0000256|HAMAP-Rule:MF_01452, ECO:0000256|SAAS:SAAS00044573}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01452, ECO:0000256|SAAS:SAAS00044602};; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_01452, ECO:0000256|SAAS:SAAS00044578};; ATP-dependent helicase/nuclease AddB {ECO:0000256|HAMAP-Rule:MF_01452}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
addB; ATP-dependent nuclease subunit B (ATP-dependenthelicase addB), Superfamily 1 UvrD-family (EC:3.6.1.-)
ATP-dependent helicase/deoxyribonuclease subunit B n=2 Tax=Clostridium difficile RepID=T4PQK8_CLODI
L3_128_070G1_scaffold_110_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9583..13410
DNA (3828bp) protein (1276aa)
ATP-dependent helicase/nuclease subunit A {ECO:0000256|HAMAP-Rule:MF_01451, ECO:0000256|SAAS:SAAS00044589}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01451, ECO:0000256|SAAS:SAAS00274943};; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_01451, ECO:0000256|SAAS:SAAS00145970};; ATP-dependent helicase/nuclease AddA {ECO:0000256|HAMAP-Rule:MF_01451}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
addA; ATP-dependent nuclease subunit A (ATP-dependenthelicase addA) (EC:3.6.1.-)
ATP-dependent helicase/nuclease subunit A n=2 Tax=Clostridium difficile RepID=T4PJR3_CLODI
L3_128_070G1_scaffold_110_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13456..14667
DNA (1212bp) protein (404aa)
Exonuclease SbcCD, D subunit n=189 Tax=Clostridium difficile RepID=T3HX98_CLODC
sbcD; Nuclease SbcCD subunit D
Nuclease SbcCD subunit D {ECO:0000313|EMBL:CAJ67883.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_128_070G1_scaffold_110_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14654..18181
DNA (3528bp) protein (1176aa)
AAA domain protein n=2 Tax=Clostridium difficile RepID=T4PRQ5_CLODI
AAA domain protein {ECO:0000313|EMBL:EQG77586.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
sbcC; Nuclease SbcCD subunit C
L3_128_070G1_scaffold_110_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18312..19565
DNA (1254bp) protein (418aa)
Transporter associated domain protein n=28 Tax=Clostridium difficile RepID=T4I064_CLODI
modulator of ions transport
Putative membrane protein {ECO:0000313|EMBL:CCL29121.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_128_070G1_scaffold_110_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19714..20766
DNA (1053bp) protein (351aa)
Sporulation integral membrane protein YtvI n=75 Tax=Clostridium difficile RepID=T2VDW8_CLODI
hypothetical protein
Sporulation integral membrane protein YtvI {ECO:0000313|EMBL:EQG77603.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_128_070G1_scaffold_110_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20857..22083
DNA (1227bp) protein (409aa)
pepT; peptidase T (EC:3.4.11.4)
Peptidase T {ECO:0000256|HAMAP-Rule:MF_00550, ECO:0000256|SAAS:SAAS00064331}; EC=3.4.11.4 {ECO:0000256|HAMAP-Rule:MF_00550};; Aminotripeptidase {ECO:0000256|HAMAP-Rule:MF_00550}; Tripeptide aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00550}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Peptidase T n=98 Tax=Clostridium difficile RepID=T3I050_CLODC
L3_128_070G1_scaffold_110_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22290..23342
DNA (1053bp) protein (351aa)
Cell wall binding repeat 2 family protein n=2 Tax=Clostridium difficile RepID=T4PQX2_CLODI
cell surface protein
Putative cell wall-binding protein {ECO:0000313|EMBL:CCL29124.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_128_070G1_scaffold_110_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23761..24330)
DNA (570bp) protein (190aa)
Phosphoesterase {ECO:0000256|RuleBase:RU362039}; EC=3.1.4.- {ECO:0000256|RuleBase:RU362039};; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
Phosphodiesterase, MJ0936 family protein n=199 Tax=Clostridium difficile RepID=C9XNE3_CLODC
phosphodiesterase
L3_128_070G1_scaffold_110_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24355..25155)
DNA (801bp) protein (267aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
Probable inorganic polyphosphate/ATP-NAD kinase n=218 Tax=Clostridium difficile RepID=C9XNE4_CLODC
inorganic polyphosphate/ATP-NAD kinase
L3_128_070G1_scaffold_110_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25290..26150
DNA (861bp) protein (287aa)
ABC-type transport system, multidrug-familyATP-binding protein (EC:3.6.3.-)
ABC transporter family protein n=122 Tax=Clostridium difficile RepID=T3I231_CLODC
ABC transporter family protein {ECO:0000313|EMBL:EQE67738.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_128_070G1_scaffold_110_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26150..26836
DNA (687bp) protein (229aa)
ABC-2 transporter family protein n=196 Tax=Clostridium difficile RepID=C9XNE6_CLODC
ABC transporter permease
ABC-2 transporter family protein {ECO:0000313|EMBL:EQE67762.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_128_070G1_scaffold_110_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26888..27430
DNA (543bp) protein (181aa)
Uncharacterized protein n=174 Tax=Clostridium difficile RepID=T3I2Z6_CLODC
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQE67741.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_128_070G1_scaffold_110_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27509..27976
DNA (468bp) protein (156aa)
YbaK / prolyl-tRNA synthetases associated domain protein n=5 Tax=Clostridium difficile RepID=T4KJT8_CLODI
oligonucleotide binding protein
Putative oligonucleotide binding protein possibly involved in recognition/discrimination or editing of prolyl-tRNA {ECO:0000313|EMBL:CCL21176.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_128_070G1_scaffold_110_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28685..29821
DNA (1137bp) protein (379aa)
bcd2; Butyryl-CoA dehydrogenase (EC:1.3.99.-)
Butyryl-CoA dehydrogenase n=185 Tax=Clostridium difficile RepID=Q18AQ1_CLOD6
Acyl-CoA dehydrogenase, C-terminal domain protein {ECO:0000313|EMBL:EFH14427.1}; TaxID=525258 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile NAP07.;"
L3_128_070G1_scaffold_110_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29880..30662
DNA (783bp) protein (261aa)
Electron transfer flavodomain protein n=2 Tax=Clostridium difficile RepID=T4PJP6_CLODI
electron transfer flavoprotein subunit beta
Electron transfer flavoproteins subunit beta {ECO:0000313|EMBL:CCK89850.1}; TaxID=1215059 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T5.;"
L3_128_070G1_scaffold_110_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30681..31691
DNA (1011bp) protein (337aa)
Electron transfer flavoprotein alpha-subunit n=207 Tax=Clostridium difficile RepID=C9XNF1_CLODC
etfA2; electron transfer flavoprotein subunit alpha
Electron transfer flavoprotein alpha-subunit {ECO:0000313|EMBL:CBE03056.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_128_070G1_scaffold_110_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31710..32507
DNA (798bp) protein (266aa)
3-hydroxybutyryl-CoA dehydratase (Crotonase) {ECO:0000313|EMBL:CCL21180.1}; EC=4.2.1.55 {ECO:0000313|EMBL:CCL21180.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
3-hydroxybutyryl-CoA dehydratase n=165 Tax=Clostridium difficile RepID=C9XNF2_CLODC
crt2; 3-hydroxybutyryl-CoA dehydratase
L3_128_070G1_scaffold_110_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32605..33450
DNA (846bp) protein (282aa)
3-hydroxybutyryl-CoA dehydrogenase {ECO:0000313|EMBL:CCL29135.1}; EC=1.1.1.157 {ECO:0000313|EMBL:CCL29135.1};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
3-hydroxybutyryl-CoA dehydrogenase n=208 Tax=Clostridium difficile RepID=C9XNF3_CLODC
3-hydroxybutyryl-CoA dehydrogenase
L3_128_070G1_scaffold_110_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33522..34712
DNA (1191bp) protein (397aa)
Acetyl-CoA C-acetyltransferase n=8 Tax=Clostridium difficile RepID=G6B8C9_CLODI
thlA1; acetyl-CoA acetyltransferase
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:CBE03061.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_128_070G1_scaffold_110_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34908..35810
DNA (903bp) protein (301aa)
pseudouridylate synthase (EC:4.2.1.70)
Putative pseudouridylate synthase {ECO:0000313|EMBL:CAJ67901.1}; EC=4.2.1.70 {ECO:0000313|EMBL:CAJ67901.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
Pseudouridine synthase n=40 Tax=Clostridium difficile RepID=T3I2N4_CLODC
L3_128_070G1_scaffold_110_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35824..36828
DNA (1005bp) protein (335aa)
Uncharacterized protein n=180 Tax=Clostridium difficile RepID=Q18AR5_CLOD6
hypothetical protein
Nucleoid-associated protein {ECO:0000313|EMBL:CKG92544.1}; Uncharacterized protein {ECO:0000313|EMBL:CDS86153.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_128_070G1_scaffold_110_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36972..37199)
DNA (228bp) protein (76aa)
Acyl carrier protein n=222 Tax=Clostridium difficile RepID=C9XNF7_CLODC
acyl carrier protein
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_128_070G1_scaffold_110_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

37371..37796
DNA (426bp) protein (142aa)
Uncharacterized protein n=214 Tax=Clostridium difficile RepID=Q18AR3_CLOD6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL29140.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_128_070G1_scaffold_110_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

37823..38050
DNA (228bp) protein (76aa)
Uncharacterized protein n=44 Tax=Clostridium difficile RepID=C9XNF9_CLODC
Uncharacterized protein {ECO:0000313|EMBL:EFH06929.1}; TaxID=525259 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile NAP08.;"
hypothetical protein
L3_128_070G1_scaffold_110_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

38232..38411
DNA (180bp) protein (60aa)
Uncharacterized protein n=197 Tax=Clostridium difficile RepID=C9YK20_CLODR
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:EQG77593.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
Displaying items 1-30 of 73 in total

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