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L3_128_070G1_scaffold_198

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_128_070G1_scaffold_198_1
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(58..408)
DNA (351bp) protein (117aa)
Uncharacterized protein n=6 Tax=Clostridium perfringens RepID=Q0SRD7_CLOPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABG85483.1}; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain SM101 / Type A).;"
L3_128_070G1_scaffold_198_2
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(475..1560)
DNA (1086bp) protein (362aa)
Stage II sporulation protein P n=3 Tax=Clostridium perfringens RepID=Q0TNS0_CLOP1
stage II sporulation protein P
Stage II sporulation protein P {ECO:0000313|EMBL:BAB81746.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L3_128_070G1_scaffold_198_3
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1709..2686)
DNA (978bp) protein (326aa)
gpr; germination protease (EC:3.4.24.78)
Germination protease {ECO:0000256|HAMAP-Rule:MF_00626}; EC=3.4.24.78 {ECO:0000256|HAMAP-Rule:MF_00626};; GPR endopeptidase {ECO:0000256|HAMAP-Rule:MF_00626}; Germination proteinase {ECO:0000256|HAMAP-Rule:MF_00626}; Spore protease {ECO:0000256|HAMAP-Rule:MF_00626}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
Germination protease n=1 Tax=Clostridium perfringens CPE str. F4969 RepID=B1RE96_CLOPF
L3_128_070G1_scaffold_198_4
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


2882..3145
DNA (264bp) protein (88aa)
30S ribosomal protein S20 n=8 Tax=Clostridium perfringens RepID=RS20_CLOP1
rpsT; 30S ribosomal protein S20
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
L3_128_070G1_scaffold_198_5
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3241..4287)
DNA (1047bp) protein (349aa)
DNA polymerase III, delta subunit {ECO:0000313|EMBL:EDT27691.1}; EC=2.7.7.7 {ECO:0000313|EMBL:EDT27691.1};; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
holA; DNA polymerase III subunit delta (EC:2.7.7.7)
DNA polymerase III subunit delta n=2 Tax=Clostridium perfringens RepID=H7CY69_CLOPF
L3_128_070G1_scaffold_198_6
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4331..5986)
DNA (1656bp) protein (552aa)
Competence family protein n=1 Tax=Clostridium perfringens C str. JGS1495 RepID=B1BIH2_CLOPF
Competence family protein {ECO:0000313|EMBL:EDS80366.1}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
comC competence related protein
L3_128_070G1_scaffold_198_7
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6038..6394)
DNA (357bp) protein (119aa)
Stage V sporulation protein AE n=7 Tax=Clostridium perfringens RepID=H7CY71_CLOPF
Stage V sporulation protein AE {ECO:0000313|EMBL:EDT15263.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
spoVAE; stage V sporulation protein AE
L3_128_070G1_scaffold_198_8
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6459..7478)
DNA (1020bp) protein (340aa)
Stage V sporulation protein AD n=6 Tax=Clostridium perfringens RepID=Q8XIR8_CLOPE
spoVAD; stage V sporulation protein AD
Stage V sporulation protein AD {ECO:0000313|EMBL:EDT27682.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
L3_128_070G1_scaffold_198_9
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7481..7951)
DNA (471bp) protein (157aa)
Stage V sporulation protein AC n=4 Tax=Clostridium perfringens RepID=Q0SRC9_CLOPS
spoVAC; stage V sporulation protein AC
Stage V sporulation protein AC {ECO:0000313|EMBL:EDT15270.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
L3_128_070G1_scaffold_198_10
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8083..8844)
DNA (762bp) protein (254aa)
RNA polymerase sigma factor n=10 Tax=Clostridium perfringens RepID=H7CY74_CLOPF
sigF; sporulation sigma factor SigF
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
L3_128_070G1_scaffold_198_11
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8862..9284)
DNA (423bp) protein (141aa)
spoIIAB; anti-sigma F factor (EC:2.7.11.1)
Anti-sigma F factor {ECO:0000256|HAMAP-Rule:MF_00637}; EC=2.7.11.1 {ECO:0000256|HAMAP-Rule:MF_00637};; Stage II sporulation protein AB {ECO:0000256|HAMAP-Rule:MF_00637}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
Anti-sigma F factor n=10 Tax=Clostridium perfringens RepID=SP2AB_CLOP1
L3_128_070G1_scaffold_198_12
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9298..9633)
DNA (336bp) protein (112aa)
Anti-sigma F factor antagonist n=11 Tax=Clostridium perfringens RepID=H7CY76_CLOPF
spoIIAA; anti-sigma F factor antagonist
Anti-sigma F factor antagonist {ECO:0000256|RuleBase:RU003749}; Stage II sporulation protein {ECO:0000256|RuleBase:RU003749}; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1721.;"
L3_128_070G1_scaffold_198_13
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9767..12052)
DNA (2286bp) protein (762aa)
ATP-dependent protease n=1 Tax=Clostridium perfringens C str. JGS1495 RepID=B1BIG6_CLOPF
ATP-dependent protease {ECO:0000313|EMBL:EDS80446.1}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
ATP-dependent protease
L3_128_070G1_scaffold_198_14
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12253..12927)
DNA (675bp) protein (225aa)
Deoxyribose-phosphate aldolase {ECO:0000255|HAMAP-Rule:MF_00114}; Short=DERA {ECO:0000255|HAMAP-Rule:MF_00114};; EC=4.1.2.4 {ECO:0000255|HAMAP-Rule:MF_00114};; 2-deoxy-D-ribose 5-phosphate aldolase {ECO:0000255|HAMAP-Rule:MF_00114}; Phosphodeoxyriboaldolase {ECO:0000255|HAMAP-Rule:MF_00114}; Short=Deoxyriboaldolase {ECO:0000255|HAMAP-Rule:MF_00114};; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
Deoxyribose-phosphate aldolase n=4 Tax=Clostridium perfringens RepID=DEOC_CLOPE
deoC; deoxyribose-phosphate aldolase
L3_128_070G1_scaffold_198_15
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13184..13591
DNA (408bp) protein (136aa)
Uncharacterized protein n=10 Tax=Clostridium perfringens RepID=H7CY79_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDT15281.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
L3_128_070G1_scaffold_198_16
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13884..16433)
DNA (2550bp) protein (850aa)
ATPase, P-type (Transporting), HAD superfamily, subfamily IC {ECO:0000313|EMBL:EDT73292.1}; EC=3.6.3.- {ECO:0000313|EMBL:EDT73292.1};; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1721.;"
ATPase, P-type (Transporting), HAD superfamily, subfamily IC n=1 Tax=Clostridium perfringens D str. JGS1721 RepID=B1UZ50_CLOPF
cation-transporting ATPase
L3_128_070G1_scaffold_198_17
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16678..18327
DNA (1650bp) protein (550aa)
manganese-dependent inorganic pyrophosphatase (EC:3.6.1.1)
Cobalt-dependent inorganic pyrophosphatase n=7 Tax=Clostridium perfringens RepID=IPYR_CLOPE
Putative manganese-dependent inorganic pyrophosphatase {ECO:0000313|EMBL:EDT25355.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
L3_128_070G1_scaffold_198_18
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18371..19012)
DNA (642bp) protein (214aa)
HAD-superfamily subfamily IB hydrolase, TIGR01490 n=1 Tax=Clostridium perfringens D str. JGS1721 RepID=B1UZ48_CLOPF
HAD-superfamily subfamily IB hydrolase, TIGR01490 {ECO:0000313|EMBL:EDT73165.1}; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1721.;"
HAD family hydrolase
L3_128_070G1_scaffold_198_19
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19096..19470)
DNA (375bp) protein (125aa)
Uncharacterized protein n=9 Tax=Clostridium perfringens RepID=H7CY83_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDT15285.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
L3_128_070G1_scaffold_198_20
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19680..21074)
DNA (1395bp) protein (465aa)
glutamate decarboxylase (EC:4.1.1.15)
Glutamate decarboxylase {ECO:0000256|RuleBase:RU361171}; EC=4.1.1.15 {ECO:0000256|RuleBase:RU361171};; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1721.;"
Glutamate decarboxylase n=9 Tax=Clostridium perfringens RepID=H7CY84_CLOPF
L3_128_070G1_scaffold_198_21
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21660..22715)
DNA (1056bp) protein (352aa)
Uncharacterized protein n=1 Tax=Clostridium perfringens F262 RepID=H7CY85_CLOPF
Uncharacterized protein {ECO:0000313|EMBL:EIA16263.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
hypothetical protein
L3_128_070G1_scaffold_198_22
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22835..24253)
DNA (1419bp) protein (473aa)
Glutamate:gamma aminobutyrate antiporter family protein n=9 Tax=Clostridium perfringens RepID=H7CY86_CLOPF
glutamate:gamma aminobutyrate antiporter family protein
Glutamate:gamma aminobutyrate antiporter family protein {ECO:0000313|EMBL:EIA16264.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
L3_128_070G1_scaffold_198_23
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24950..28465)
DNA (3516bp) protein (1172aa)
Pyruvate-flavodoxin oxidoreductase {ECO:0000256|PIRNR:PIRNR000159}; EC=1.2.7.- {ECO:0000256|PIRNR:PIRNR000159};; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1721.;"
nifJ; pyruvate-flavodoxin oxidoreductase (EC:1.2.7.1)
Pyruvate-flavodoxin oxidoreductase n=8 Tax=Clostridium perfringens RepID=Q0TNP9_CLOP1
L3_128_070G1_scaffold_198_24
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28570..28995)
DNA (426bp) protein (142aa)
Flavodoxin n=11 Tax=Clostridium perfringens RepID=H7CY88_CLOPF
flavodoxin
Flavodoxin {ECO:0000313|EMBL:EDT15279.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
L3_128_070G1_scaffold_198_25
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29202..30275)
DNA (1074bp) protein (358aa)
murG; UDP diphospho-muramoyl pentapeptide beta-N acetylglucosaminyl transferase (EC:2.4.1.227)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082867}; EC=2.4.1.227 {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082938};; Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase {ECO:0000256|HAMAP-Rule:MF_00033}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase n=9 Tax=Clostridium perfringens RepID=MURG_CLOP1
L3_128_070G1_scaffold_198_26
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30439..30618
DNA (180bp) protein (60aa)
Small, acid-soluble spore protein C1 n=11 Tax=Clostridium perfringens RepID=SAS1_CLOPE
sspC1; small, acid-soluble spore protein
Small, acid-soluble spore protein {ECO:0000313|EMBL:EDT15303.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
L3_128_070G1_scaffold_198_27
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30739..32517)
DNA (1779bp) protein (593aa)
Probable single-strand DNA-specific exonuclease n=1 Tax=Clostridium perfringens (strain 13 / Type A) RepID=Q8XIQ0_CLOPE
recJ; single-stranded-DNA-specific exonuclease RecJ
Probable single-strand DNA-specific exonuclease {ECO:0000313|EMBL:BAB81771.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L3_128_070G1_scaffold_198_28
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32529..33740)
DNA (1212bp) protein (404aa)
Peptidase, M16 family n=1 Tax=Clostridium perfringens (strain SM101 / Type A) RepID=Q0SRB1_CLOPS
M16 family peptidase
Peptidase, M16 family {ECO:0000313|EMBL:ABG86267.1}; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain SM101 / Type A).;"
L3_128_070G1_scaffold_198_29
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33954..34529)
DNA (576bp) protein (192aa)
DJ-1 family protein n=1 Tax=Clostridium perfringens E str. JGS1987 RepID=B1BSR0_CLOPF
DJ-1 family protein {ECO:0000313|EMBL:EDT15305.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
DJ-1 family protein
L3_128_070G1_scaffold_198_30
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34541..37480)
DNA (2940bp) protein (980aa)
DNA topoisomerase (ATP-hydrolyzing) {ECO:0000256|SAAS:SAAS00075954}; EC=5.99.1.3 {ECO:0000256|SAAS:SAAS00075954};; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
DNA topoisomerase, GyrA/ParC subunit family n=1 Tax=Clostridium perfringens NCTC 8239 RepID=B1RLK8_CLOPF
parC; DNA topoisomerase IV subunit A
Displaying items 1-30 of 34 in total

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