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L3_128_070G1_scaffold_573

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_128_070G1_scaffold_573_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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340..894
DNA (555bp) protein (185aa)
Protein YrdA n=4 Tax=Enterobacteriaceae RepID=R8XBX7_ECOLX
Protein YrdA {ECO:0000313|EMBL:EOQ54690.1}; TaxID=1169351 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE33.;"
yrdA; hypothetical protein
L3_128_070G1_scaffold_573_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(870..1127)
DNA (258bp) protein (86aa)
Uncharacterized protein n=2 Tax=Escherichia coli RepID=S0TU59_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:EQV95259.1}; TaxID=1281168 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KOEGE 71 (186a).;"
yrdB; hypothetical protein
L3_128_070G1_scaffold_573_3
Escherichia sp. KTE31, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1124..1954)
DNA (831bp) protein (277aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=1169349 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia sp. KTE31.;"
aroE; shikimate 5-dehydrogenase (EC:1.1.1.25)
Shikimate dehydrogenase n=2 Tax=Escherichia coli RepID=R8XH65_ECOLX
L3_128_070G1_scaffold_573_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1947..2519)
DNA (573bp) protein (191aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|HAMAP-Rule:MF_01852, ECO:0000256|SAAS:SAAS00012127}; Short=TC-AMP synthase {ECO:0000256|HAMAP-Rule:MF_01852};; EC=2.7.7.87 {ECO:0000256|HAMAP-Rule:MF_01852, ECO:0000256|SAAS:SAAS00012122};; L-threonylcarbamoyladenylate synthase {ECO:0000256|HAMAP-Rule:MF_01852}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaC {ECO:0000256|HAMAP-Rule:MF_01852}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaC {ECO:0000256|HAMAP-Rule:MF_01852}; TaxID=1169351 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE33.;"
tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein n=1 Tax=Escherichia sp. TW11588 RepID=UPI0002BA87EA
SUA5/yciO/yrdC domain-containing protein
L3_128_070G1_scaffold_573_5
Escherichia sp. KTE31, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2524..3066)
DNA (543bp) protein (181aa)
DNA topoisomerase n=2 Tax=Escherichia coli RepID=R8XCI6_ECOLX
DNA topoisomerase {ECO:0000313|EMBL:EOU84271.1}; TaxID=1169349 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia sp. KTE31.;"
yrdD; DNA topoisomerase,DNA topoisomerase 1,DNA topoisomerase I,Zn-finger domain associated with topoisomerase type I,DNA topoisomerase I,Topoisomerase DNA binding C4 zinc finger
L3_128_070G1_scaffold_573_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3095..3568)
DNA (474bp) protein (158aa)
Protein Smg n=949 Tax=Enterobacteriaceae RepID=SMG_ECO24
smg; hypothetical protein
Protein Smg {ECO:0000256|HAMAP-Rule:MF_00598}; TaxID=1446551 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O119:H4 str. 03-3458.;"
L3_128_070G1_scaffold_573_7
Escherichia sp. KTE31, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3540..4664)
DNA (1125bp) protein (375aa)
Protein smf n=2 Tax=Escherichia coli RepID=R8XCZ6_ECOLX
Protein smf {ECO:0000313|EMBL:EOU84269.1}; TaxID=1169349 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia sp. KTE31.;"
smf; hypothetical protein
L3_128_070G1_scaffold_573_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4794..5303
DNA (510bp) protein (170aa)
peptide deformylase (EC:3.5.1.88)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1280986 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 36 (4-5675286).;"
Peptide deformylase n=1173 Tax=Enterobacteriaceae RepID=DEF_ECO27
L3_128_070G1_scaffold_573_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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5318..6265
DNA (948bp) protein (316aa)
Methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043680}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=1444231 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-156-04_S4_C2.;"
Methionyl-tRNA formyltransferase n=3 Tax=Enterobacteriaceae RepID=FMT_SHIDS
L3_128_070G1_scaffold_573_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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6317..7606
DNA (1290bp) protein (430aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|HAMAP-Rule:MF_01856, ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.176 {ECO:0000256|HAMAP-Rule:MF_01856, ECO:0000256|SAAS:SAAS00011820};; 16S rRNA m5C967 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01856}; rRNA (cytosine-C(5)-)-methyltransferase RsmB {ECO:0000256|HAMAP-Rule:MF_01856}; TaxID=1281168 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KOEGE 71 (186a).;"
Ribosomal RNA small subunit methyltransferase B n=3 Tax=Escherichia coli RepID=R8XCJ1_ECOLX
rsmB; 16S rRNA methyltransferase B
L3_128_070G1_scaffold_573_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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7628..9004
DNA (1377bp) protein (459aa)
Trk system potassium uptake protein TrkA n=1353 Tax=Enterobacteriaceae RepID=TRKA_ECO57
trkA; potassium transporter peripheral membrane protein
Trk system potassium uptake protein trkA {ECO:0000313|EMBL:EGP23379.1}; TaxID=1001989 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli PCN033.;"
L3_128_070G1_scaffold_573_12
Escherichia sp. KTE11, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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9134..9544
DNA (411bp) protein (137aa)
Large-conductance mechanosensitive channel n=8 Tax=Escherichia coli RepID=L2VJE7_ECOLX
mscL; large-conductance mechanosensitive channel
Large-conductance mechanosensitive channel {ECO:0000256|HAMAP-Rule:MF_00115, ECO:0000256|SAAS:SAAS00023935}; TaxID=1169331 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia sp. KTE11.;"
L3_128_070G1_scaffold_573_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9541..9759)
DNA (219bp) protein (73aa)
Alternative ribosome-rescue factor n=4 Tax=Escherichia coli RepID=R8XH75_ECOLX
Alternative ribosome-rescue factor {ECO:0000313|EMBL:EOQ54702.1}; TaxID=1169351 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE33.;"
hypothetical protein
L3_128_070G1_scaffold_573_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9815..10240)
DNA (426bp) protein (142aa)
HTH-type transcriptional regulator zntR n=2 Tax=Escherichia coli RepID=R8XC29_ECOLX
HTH-type transcriptional regulator zntR {ECO:0000313|EMBL:EOQ54703.1}; TaxID=1169351 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE33.;"
zntR; zinc-responsive transcriptional regulator
L3_128_070G1_scaffold_573_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10251..10619)
DNA (369bp) protein (123aa)
Uncharacterized protein n=3 Tax=Escherichia coli RepID=R8XCJ5_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:EOQ54704.1}; TaxID=1169351 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE33.;"
yhdN; hypothetical protein
L3_128_070G1_scaffold_573_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(10726..11109)
DNA (384bp) protein (128aa)
50S ribosomal protein L17 n=1443 Tax=Enterobacteriaceae RepID=RL17_ECO24
50S ribosomal protein L17
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=1444123 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-222-05_S3_C1.;"
Displaying 16 items

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