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L3_128_361G1_scaffold_1172

Search features with annotation key words

Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_128_361G1_scaffold_1172_1
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(138..1490)
DNA (1353bp) protein (451aa)
Uncharacterized protein n=2 Tax=Ruminococcus gnavus RepID=A7B424_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EDN77392.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
hypothetical protein
L3_128_361G1_scaffold_1172_2
unknown

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comp(1523..1714)
DNA (192bp) protein (64aa)

This feature has no annotations

L3_128_361G1_scaffold_1172_3
Treponema socranskii, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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comp(1744..3084)
DNA (1341bp) protein (447aa)
hypothetical protein n=1 Tax=Spirochaeta bajacaliforniensis RepID=UPI00036E4869
GntP family permease {ECO:0000313|EMBL:ERF60703.1}; TaxID=1125725 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema socranskii subsp. socranskii VPI DR56BR1116 = ATCC 35536.;"
gntP; gluconate transporter
L3_128_361G1_scaffold_1172_4
Treponema socranskii, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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comp(3135..4121)
DNA (987bp) protein (329aa)
Ketol-acid reductoisomerase {ECO:0000256|SAAS:SAAS00051427}; EC=1.1.1.86 {ECO:0000256|SAAS:SAAS00051427};; TaxID=1125725 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema socranskii subsp. socranskii VPI DR56BR1116 = ATCC 35536.;"
ketol-acid reductoisomerase (EC:1.1.1.86)
Ketol-acid reductoisomerase n=1 Tax=Treponema socranskii subsp. socranskii VPI DR56BR1116 = ATCC 35536 RepID=U2KLB6_TRESO
L3_128_361G1_scaffold_1172_5
Treponema socranskii, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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comp(4360..5079)
DNA (720bp) protein (240aa)
FCD domain protein n=1 Tax=Treponema socranskii subsp. socranskii VPI DR56BR1116 = ATCC 35536 RepID=U2MJ32_TRESO
FCD domain protein {ECO:0000313|EMBL:ERF60736.1}; TaxID=1125725 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema socranskii subsp. socranskii VPI DR56BR1116 = ATCC 35536.;"
GntR family transcriptional regulator
L3_128_361G1_scaffold_1172_6
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5463..5774)
DNA (312bp) protein (104aa)
trx_1; thioredoxin (EC:1.8.1.9)
Thioredoxin n=3 Tax=Lachnospiraceae RepID=A7B427_RUMGN
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
L3_128_361G1_scaffold_1172_7
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6001..6669)
DNA (669bp) protein (223aa)
tRNA (guanine-N(7)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; EC=2.1.1.33 {ECO:0000256|HAMAP-Rule:MF_01057};; tRNA (guanine(46)-N(7))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; tRNA(m7G46)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
tRNA (guanine-N(7)-)-methyltransferase (EC:2.1.1.33)
tRNA (guanine-N(7)-)-methyltransferase n=3 Tax=Lachnospiraceae RepID=A7B430_RUMGN
L3_128_361G1_scaffold_1172_8
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6864..8531)
DNA (1668bp) protein (556aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CC55_001C RepID=V8BRP7_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN45837.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
L3_128_361G1_scaffold_1172_9
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8533..11010)
DNA (2478bp) protein (826aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CC55_001C RepID=V8BRP7_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD17465.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
leucine Rich Repeat domain-containing protein
L3_128_361G1_scaffold_1172_10
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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11553..12596
DNA (1044bp) protein (348aa)
Archaeal/vacuolar-type H+-ATPase subunit C (EC:3.6.3.14)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=V8BQM4_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD17463.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
L3_128_361G1_scaffold_1172_11
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12596..14545
DNA (1950bp) protein (650aa)
Archaeal/vacuolar-type H+-ATPase subunit I (EC:3.6.3.14)
V-type ATPase 116kDa subunit family protein n=3 Tax=Lachnospiraceae RepID=A7B5P0_RUMGN
V-type ATP synthase subunit I {ECO:0000256|RuleBase:RU361189}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
L3_128_361G1_scaffold_1172_12
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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14561..14995
DNA (435bp) protein (145aa)
ATP synthase subunit C. (EC:3.6.3.14)
ATP synthase subunit C n=3 Tax=Clostridiales RepID=A7B5P1_RUMGN
ATP synthase subunit C {ECO:0000313|EMBL:CCZ66486.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L3_128_361G1_scaffold_1172_13
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15003..15305
DNA (303bp) protein (101aa)
Archaeal/vacuolar-type H+-ATPase subunit F (EC:3.6.3.14)
ATP synthase subunit F n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TLC0_9FIRM
ATP synthase subunit F {ECO:0000313|EMBL:CCZ66485.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L3_128_361G1_scaffold_1172_14
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15335..15820
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TT95_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ66484.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Archaeal/vacuolar-type H+-ATPase subunit E
L3_128_361G1_scaffold_1172_15
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15885..17579
DNA (1695bp) protein (565aa)
V-type ATP synthase alpha chain {ECO:0000256|HAMAP-Rule:MF_00309}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_00309};; V-ATPase subunit A {ECO:0000256|HAMAP-Rule:MF_00309}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
Archaeal/vacuolar-type H+-ATPase subunit A (EC:3.6.3.14)
V-type ATP synthase alpha chain n=3 Tax=Clostridiales RepID=F7JZI9_9FIRM
L3_128_361G1_scaffold_1172_16
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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17595..19028
DNA (1434bp) protein (478aa)
Archaeal/vacuolar-type H+-ATPase subunit B (EC:3.6.3.14)
V-type ATP synthase beta chain n=3 Tax=Clostridiales RepID=A7B5P5_RUMGN
V-type ATP synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00310}; V-ATPase subunit B {ECO:0000256|HAMAP-Rule:MF_00310}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L3_128_361G1_scaffold_1172_17
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19041..19670
DNA (630bp) protein (210aa)
H(+)-transporting ATP synthase, vacuolar type, subunit D (EC:3.6.3.14)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CC55_001C RepID=V8BSM5_RUMGN
V-type ATP synthase subunit D {ECO:0000256|HAMAP-Rule:MF_00271}; V-ATPase subunit D {ECO:0000256|HAMAP-Rule:MF_00271}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
L3_128_361G1_scaffold_1172_18
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19722..20489)
DNA (768bp) protein (256aa)
Amidohydrolase family protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TLB5_9FIRM
Amidohydrolase family protein {ECO:0000313|EMBL:CCZ66480.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L3_128_361G1_scaffold_1172_19
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20673..22400)
DNA (1728bp) protein (576aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A7B5Q0_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD17453.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
hypothetical protein
L3_128_361G1_scaffold_1172_20
unknown

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comp(22468..22572)
DNA (105bp) protein (35aa)

This feature has no annotations

L3_128_361G1_scaffold_1172_21
Coprococcus catus, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22532..22726)
DNA (195bp) protein (65aa)
Uncharacterized conserved protein n=1 Tax=Coprococcus catus GD/7 RepID=D4J5N9_9FIRM
hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:CBK79660.1}; TaxID=717962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus catus GD/7.;"
L3_128_361G1_scaffold_1172_22
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22968..23705)
DNA (738bp) protein (246aa)
Putative uncharacterized protein n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WSZ3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGX72907.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
KilA domain-containing protein
L3_128_361G1_scaffold_1172_23
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23686..23907)
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5U5R9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ66476.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
L3_128_361G1_scaffold_1172_24
[Clostridium] celerecrescens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23971..25602)
DNA (1632bp) protein (544aa)
Putative protease CspB n=2 Tax=Lachnospiraceae RepID=A7B5Q3_RUMGN
Peptidase S8 {ECO:0000313|EMBL:KEZ89153.1}; TaxID=29354 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] celerecrescens.;"
Subtilisin-like serine proteases
L3_128_361G1_scaffold_1172_25
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25603..26208)
DNA (606bp) protein (202aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BQG0_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD17428.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Rubrerythrin
L3_128_361G1_scaffold_1172_26
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26292..27308)
DNA (1017bp) protein (339aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UEK2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67317.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Glycosyltransferases involved in cell wall biogenesis
L3_128_361G1_scaffold_1172_27
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27450..28673
DNA (1224bp) protein (408aa)
Pyrophosphate--fructose 6-phosphate 1-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_01978}; EC=2.7.1.90 {ECO:0000256|HAMAP-Rule:MF_01978};; 6-phosphofructokinase, pyrophosphate dependent {ECO:0000256|HAMAP-Rule:MF_01978}; PPi-dependent phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_01978}; Pyrophosphate-dependent 6-phosphofructose-1-kinase {ECO:0000256|HAMAP-Rule:MF_01978}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
6-phosphofructokinase (EC:2.7.1.11)
Phosphofructokinase n=3 Tax=Lachnospiraceae RepID=A7B5Q6_RUMGN
L3_128_361G1_scaffold_1172_28
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29736..31094
DNA (1359bp) protein (453aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TRC2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ68348.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Glycosidases
L3_128_361G1_scaffold_1172_29
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31139..32335
DNA (1197bp) protein (399aa)
Transcriptional regulatory protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UHQ6_9FIRM
Transcriptional regulatory protein {ECO:0000313|EMBL:CCZ68347.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
transcriptional regulatory protein
L3_128_361G1_scaffold_1172_30
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32556..33455
DNA (900bp) protein (300aa)
Amino acid ABC transporter amino acid-binding protein/permease protein putative n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UB08_9FIRM
Amino acid ABC transporter amino acid-binding protein/permease protein putative {ECO:0000313|EMBL:CCZ68346.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
amino acid ABC transporter permease/substrate-binding protein
Displaying items 1-30 of 50 in total

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