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L3_128_361G1_scaffold_1819

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_128_361G1_scaffold_1819_1
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(226..1425)
DNA (1200bp) protein (400aa)
Metal ion transporter metal ion (Mn2+/Fe2+) transporter (Nramp) family n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TLF8_9FIRM
Metal ion transporter metal ion (Mn2+/Fe2+) transporter (Nramp) family {ECO:0000313|EMBL:CCZ66528.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
transporter
L3_128_361G1_scaffold_1819_2
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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1458..2423
DNA (966bp) protein (322aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BL45_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD15854.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
transcriptional regulator, LacI family
L3_128_361G1_scaffold_1819_3
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2480..2779)
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5U5Y5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD15855.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
DnaJ-class molecular chaperone with C-terminal Zn finger domain
L3_128_361G1_scaffold_1819_4
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2821..3411)
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5U5Y5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN42558.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
DnaJ-class molecular chaperone with C-terminal Zn finger domain
L3_128_361G1_scaffold_1819_5
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3471..3911)
DNA (441bp) protein (147aa)
Hsp20/alpha crystallin family protein n=4 Tax=Clostridiales RepID=A7B048_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD15856.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
heat shock protein Hsp20
L3_128_361G1_scaffold_1819_6
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4062..4913)
DNA (852bp) protein (284aa)
Transcriptional regulator, AraC family n=1 Tax=Ruminococcus torques L2-14 RepID=D4M411_9FIRM
transcriptional regulator, AraC family
Transcriptional regulator, AraC family {ECO:0000313|EMBL:CBL25973.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L3_128_361G1_scaffold_1819_7
Coprococcus catus, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4954..6288)
DNA (1335bp) protein (445aa)
Putative efflux protein, MATE family n=1 Tax=Coprococcus catus GD/7 RepID=D4JBK2_9FIRM
putative efflux protein, MATE family
Putative efflux protein, MATE family {ECO:0000313|EMBL:CBK81723.1}; TaxID=717962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus catus GD/7.;"
L3_128_361G1_scaffold_1819_8
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6472..7119)
DNA (648bp) protein (216aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BM47_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN44346.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
transposase IS4 family protein
L3_128_361G1_scaffold_1819_9
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7237..7587)
DNA (351bp) protein (117aa)
recombinase XerC n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0002FBAF83
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACR77339.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L3_128_361G1_scaffold_1819_10
Coprococcus sp. HPP0074, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7602..10043)
DNA (2442bp) protein (814aa)
Beta-glucosidase-related glycosidases (EC:3.2.1.21)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=S2Y300_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EPD58581.1}; TaxID=1078090 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0074.;"
L3_128_361G1_scaffold_1819_11
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10126..11796)
DNA (1671bp) protein (557aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UCB9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ66537.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-)
L3_128_361G1_scaffold_1819_12
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11887..13266)
DNA (1380bp) protein (460aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=R5TLG5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN44350.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_128_361G1_scaffold_1819_13
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13408..14148
DNA (741bp) protein (247aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BM52_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD15870.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
AraC family transcriptional regulator
L3_128_361G1_scaffold_1819_14
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14253..16952)
DNA (2700bp) protein (900aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BN16_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD15871.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
hypothetical protein
L3_128_361G1_scaffold_1819_15
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16975..19389)
DNA (2415bp) protein (805aa)
chitobiose phosphorylase (EC:2.4.1.-)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BM71_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD15872.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
L3_128_361G1_scaffold_1819_16
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19672..19791)
DNA (120bp) protein (40aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=R5UCC4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN44354.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_128_361G1_scaffold_1819_17
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19938..20279)
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B025_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EDN78738.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
hypothetical protein
L3_128_361G1_scaffold_1819_18
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20483..21049
DNA (567bp) protein (189aa)
Putative manganese efflux pump MntP n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B023_RUMGN
Putative manganese efflux pump MntP {ECO:0000256|HAMAP-Rule:MF_01521}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
Predicted membrane protein
L3_128_361G1_scaffold_1819_19
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21120..23450)
DNA (2331bp) protein (777aa)
Ferrous iron transporter B n=3 Tax=Clostridiales RepID=F7K0Z0_9FIRM
Ferrous iron transporter B {ECO:0000313|EMBL:ETD15876.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
ferrous iron transporter FeoB
L3_128_361G1_scaffold_1819_20
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23569..25224)
DNA (1656bp) protein (552aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|SAAS:SAAS00085897};; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7)
1-deoxy-D-xylulose-5-phosphate synthase n=3 Tax=Lachnospiraceae RepID=V8BM78_RUMGN
Displaying 20 items

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