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L3_128_361G1_scaffold_79

Search features with annotation key words

Displaying items 1-30 of 91 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_128_361G1_scaffold_79_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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2..586
DNA (585bp) protein (195aa)
peptide ABC transporter ATPase (EC:3.6.3.31)
ABC-type antimicrobial peptide transport system, ATPase component n=3 Tax=Bifidobacterium bifidum RepID=E4NYQ2_BIFBP
Lipo protein-releasing system ATP-binding protein {ECO:0000313|EMBL:AFL05045.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_128_361G1_scaffold_79_2
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

844..1125
DNA (282bp) protein (94aa)
Branched-chain amino acid transport protein AzlD n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4VBW2_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:CDB23135.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
hypothetical protein
L3_128_361G1_scaffold_79_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1195..2250)
DNA (1056bp) protein (352aa)
NAD-dependent oxidoreductase (EC:1.1.1.179)
NAD-dependent oxidoreductase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NYQ4_BIFBP
Uncharacterized protein {ECO:0000313|EMBL:BAQ98677.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_128_361G1_scaffold_79_4
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2477..2995)
DNA (519bp) protein (173aa)
ptpA; putative low molecular weight protein-tyrosine-phosphatase (EC:3.1.3.48)
Putative low molecular weight protein-tyrosine-phosphatase n=2 Tax=Bifidobacterium RepID=I3WJI6_BIFBI
Putative low molecular weight protein-tyrosine-phosphatase {ECO:0000313|EMBL:CDB23133.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_128_361G1_scaffold_79_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3065..3724)
DNA (660bp) protein (220aa)
Dihydrofolate reductase {ECO:0000313|EMBL:AFL05050.1}; EC=1.5.1.3 {ECO:0000313|EMBL:AFL05050.1};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Dihydrofolate reductase n=8 Tax=Bifidobacterium RepID=E3EQH1_BIFBS
dfrA; dihydrofolate reductase
L3_128_361G1_scaffold_79_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3772..4644)
DNA (873bp) protein (291aa)
thyA; thymidylate synthase (EC:2.1.1.45)
Thymidylate synthase {ECO:0000256|HAMAP-Rule:MF_00008, ECO:0000256|SAAS:SAAS00215270}; Short=TS {ECO:0000256|HAMAP-Rule:MF_00008};; Short=TSase {ECO:0000256|HAMAP-Rule:MF_00008};; EC=2.1.1.45 {ECO:0000256|HAMAP-Rule:MF_00008, ECO:0000256|SAAS:SAAS00215290};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Thymidylate synthase n=3 Tax=Bifidobacterium RepID=I3WJI8_BIFBI
L3_128_361G1_scaffold_79_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5096..5509
DNA (414bp) protein (138aa)
OsmC family protein n=4 Tax=Bifidobacterium RepID=E3EQH3_BIFBS
OsmC family protein
OsmC family protein {ECO:0000313|EMBL:EKF16587.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_128_361G1_scaffold_79_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5651..6691)
DNA (1041bp) protein (347aa)
Universal stress protein n=4 Tax=Bifidobacterium bifidum RepID=E3EQH4_BIFBS
universal stress protein family
Universal stress protein {ECO:0000313|EMBL:AFL05053.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_128_361G1_scaffold_79_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6971..7777)
DNA (807bp) protein (269aa)
Cell wall-associated protein (NlpC/P60 family domain) n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GCF3_9BIFI
NlpC/P60 domain
Uncharacterized protein {ECO:0000313|EMBL:ADO53631.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_128_361G1_scaffold_79_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7928..8950)
DNA (1023bp) protein (341aa)
sle; N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28)
CHAP domain containing protein n=2 Tax=Bifidobacterium bifidum RepID=K2H717_BIFBI
CHAP domain containing protein {ECO:0000313|EMBL:EKE49761.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L3_128_361G1_scaffold_79_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9115..10257
DNA (1143bp) protein (381aa)
Phosphoserine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; EC=2.6.1.52 {ECO:0000256|HAMAP-Rule:MF_00160};; Phosphohydroxythreonine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Phosphoserine aminotransferase n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CFT7_BIFBI
serC; phosphoserine aminotransferase
L3_128_361G1_scaffold_79_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10368..10622
DNA (255bp) protein (85aa)
Uncharacterized protein n=3 Tax=Bifidobacterium bifidum RepID=E4VBV0_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ERI83414.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_128_361G1_scaffold_79_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10629..11897)
DNA (1269bp) protein (423aa)
senX3; sensor-like histidine kinase (EC:2.7.13.3)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CH91_BIFBI
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein {ECO:0000313|EMBL:ERI83413.1}; Two-component sensor kinase {ECO:0000313|EMBL:BAQ98687.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_128_361G1_scaffold_79_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12081..12761
DNA (681bp) protein (227aa)
Phosphate-specific transport system accessory protein PhoU n=5 Tax=Bifidobacterium bifidum RepID=I3WJJ7_BIFBI
phoU; phosphate transport system regulatory protein
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_128_361G1_scaffold_79_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12982..13146)
DNA (165bp) protein (55aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=I3WJJ8_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:BAQ98689.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L3_128_361G1_scaffold_79_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13299..14039)
DNA (741bp) protein (247aa)
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01039, ECO:0000256|RuleBase:RU004512}; Short=BPG-dependent PGAM {ECO:0000256|HAMAP-Rule:MF_01039};; Short=PGAM {ECO:0000256|HAMAP-Rule:MF_01039};; Short=Phosphoglyceromutase {ECO:0000256|HAMAP-Rule:MF_01039};; Short=dPGM {ECO:0000256|HAMAP-Rule:MF_01039};; EC=5.4.2.11 {ECO:0000256|HAMAP-Rule:MF_01039, ECO:0000256|RuleBase:RU004512};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=7 Tax=Bifidobacterium bifidum RepID=E4NYR6_BIFBP
gpm5; phosphoglycerate mutase
L3_128_361G1_scaffold_79_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14117..15082)
DNA (966bp) protein (322aa)
1,4-dihydroxy-2-naphthoate octaprenyltransferase {ECO:0000256|HAMAP-Rule:MF_01937}; Short=DHNA-octaprenyltransferase {ECO:0000256|HAMAP-Rule:MF_01937};; EC=2.5.1.74 {ECO:0000256|HAMAP-Rule:MF_01937};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
1,4-dihydroxy-2-naphthoate octaprenyltransferase n=3 Tax=Bifidobacterium bifidum RepID=E4VBU5_BIFBI
menA; 1,4-dihydroxy-2-naphthoateoctaprenyl transferase
L3_128_361G1_scaffold_79_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15299..16990)
DNA (1692bp) protein (564aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
Lysine--tRNA ligase n=4 Tax=Bifidobacterium bifidum RepID=E3ER65_BIFBS
lysS; Lysyl-tRNA synthetase
L3_128_361G1_scaffold_79_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17357..18544
DNA (1188bp) protein (396aa)
Transporter, major facilitator family protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4VBU3_BIFBI
araJ; arabinose polymer MFS transporter
Putative arabinose polymer MFS transporter {ECO:0000313|EMBL:ADO53641.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_128_361G1_scaffold_79_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18723..20786
DNA (2064bp) protein (688aa)
Tetratricopeptide tPR_2 repeat protein n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2MUQ6_BIFBI
Tetratricopeptide tPR_2 repeat protein {ECO:0000313|EMBL:EKF15758.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
hypothetical protein
L3_128_361G1_scaffold_79_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20855..21466
DNA (612bp) protein (204aa)
Uncharacterized protein n=5 Tax=Bifidobacterium bifidum RepID=I3WJK4_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO53643.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_128_361G1_scaffold_79_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21520..22473)
DNA (954bp) protein (318aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=K2M1G5_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKF15756.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_128_361G1_scaffold_79_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22506..24212)
DNA (1707bp) protein (569aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HUM3_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKE50162.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L3_128_361G1_scaffold_79_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24293..25771
DNA (1479bp) protein (493aa)
Histidine kinase sensor of two component system n=4 Tax=Bifidobacterium bifidum RepID=E4NYS4_BIFBP
histidine kinase sensor
Histidine kinase sensor of two component system {ECO:0000313|EMBL:KFI43816.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_128_361G1_scaffold_79_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25768..26601
DNA (834bp) protein (278aa)
Response regulator of two-component system n=3 Tax=Bifidobacterium bifidum RepID=K2I5Y4_BIFBI
Transcriptional regulator, LuxR family {ECO:0000313|EMBL:ERI83477.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
response regulator of two-component system
L3_128_361G1_scaffold_79_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26723..28171
DNA (1449bp) protein (483aa)
gnt; 6-phosphogluconate dehydrogenase (EC:1.1.1.44)
6-phosphogluconate dehydrogenase, decarboxylating {ECO:0000256|PIRNR:PIRNR000109}; EC=1.1.1.44 {ECO:0000256|PIRNR:PIRNR000109};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
6-phosphogluconate dehydrogenase, decarboxylating n=4 Tax=Bifidobacterium bifidum RepID=E4NYS6_BIFBP
L3_128_361G1_scaffold_79_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28249..28947)
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CFZ7_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI83475.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L3_128_361G1_scaffold_79_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29041..29829)
DNA (789bp) protein (263aa)
Pgl 6-phosphogluconolactonase {ECO:0000313|EMBL:KFI43819.1}; EC=3.1.1.31 {ECO:0000313|EMBL:KFI43819.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
6-phosphogluconolactonase n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2BZ31_BIFBI
pgl; 6-phosphogluconolactonase
L3_128_361G1_scaffold_79_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30004..30993)
DNA (990bp) protein (330aa)
Putative opcA protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CHF1_BIFBI
Oxppcycle protein OpcA {ECO:0000313|EMBL:KFI43820.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Oxppcycle protein OpcA
L3_128_361G1_scaffold_79_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30990..32576)
DNA (1587bp) protein (529aa)
zwf; glucose-6-phosphate 1-dehydrogenase (EC:1.1.1.49)
Glucose-6-phosphate 1-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497}; Short=G6PD {ECO:0000256|HAMAP-Rule:MF_00966};; EC=1.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Glucose-6-phosphate 1-dehydrogenase n=3 Tax=Bifidobacterium bifidum RepID=E3ER77_BIFBS
Displaying items 1-30 of 91 in total

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