ggKbase home page

L3_128_361G1_scaffold_121

Search features with annotation key words

Displaying items 1-30 of 79 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_128_361G1_scaffold_121_1
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

210..1439
DNA (1230bp) protein (410aa)
Cell division protein ftsA n=1 Tax=Clostridium sp. CAG:343 RepID=R6P9Q8_9CLOT
Cell division protein ftsA {ECO:0000256|PIRNR:PIRNR003101}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
cell division protein FtsA
L3_128_361G1_scaffold_121_2
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1477..2595
DNA (1119bp) protein (373aa)
Cell division protein FtsZ n=1 Tax=Clostridium sp. CAG:343 RepID=R6N3Q5_9CLOT
Cell division protein FtsZ {ECO:0000256|HAMAP-Rule:MF_00909, ECO:0000256|RuleBase:RU000631}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
cell division protein FtsZ
L3_128_361G1_scaffold_121_3
Clostridium sp. CAG:440, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2931..3821
DNA (891bp) protein (297aa)
Sporulation sigma-E factor-processing peptidase {ECO:0000256|PIRNR:PIRNR018571}; EC=3.4.23.- {ECO:0000256|PIRNR:PIRNR018571};; Membrane-associated aspartic protease {ECO:0000256|PIRNR:PIRNR018571}; Stage II sporulation protein GA {ECO:0000256|PIRNR:PIRNR018571}; TaxID=1262807 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:440.;"
Sigma-E processing peptidase SpoIIGA n=1 Tax=Clostridium sp. CAG:440 RepID=R7GDY7_9CLOT
sigma-E processing peptidase SpoIIGA
L3_128_361G1_scaffold_121_4
Clostridium sp. CAG:389, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3948..4652
DNA (705bp) protein (235aa)
RNA polymerase sigma factor n=1 Tax=Clostridium sp. CAG:389 RepID=R7LSU9_9CLOT
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1262801 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:389.;"
RNA polymerase sigma-E factor
L3_128_361G1_scaffold_121_5
Clostridium sp. CAG:575, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4594..4686
DNA (93bp) protein (31aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:575 RepID=R6H1V7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB31738.1}; TaxID=1262823 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:575.;"
L3_128_361G1_scaffold_121_6
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4749..5522
DNA (774bp) protein (258aa)
RNA polymerase sigma factor n=1 Tax=Clostridium sp. CAG:343 RepID=R6P9R3_9CLOT
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
sporulation sigma factor SigG
L3_128_361G1_scaffold_121_7
Clostridium sp. CAG:470, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5782..6018
DNA (237bp) protein (79aa)
Sporulation protein YlmC/YmxH family n=1 Tax=Clostridium sp. CAG:470 RepID=R7FG12_9CLOT
Sporulation protein YlmC/YmxH family {ECO:0000313|EMBL:CDE13770.1}; TaxID=1262812 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:470.;"
YlmC/YmxH family sporulation protein
L3_128_361G1_scaffold_121_8
Clostridium sp. CAG:273, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


6164..7918
DNA (1755bp) protein (585aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=1262789 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:273.;"
alanyl-tRNA synthetase (EC:6.1.1.7)
Alanine--tRNA ligase n=1 Tax=Clostridium sp. CAG:273 RepID=R7L667_9CLOT
L3_128_361G1_scaffold_121_9
Clostridium sp. CAG:440, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8066..8410
DNA (345bp) protein (115aa)
Histidine triad domain protein n=1 Tax=Clostridium sp. CAG:440 RepID=R7GGS7_9CLOT
Histidine triad domain protein {ECO:0000313|EMBL:CDE25162.1}; TaxID=1262807 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:440.;"
HIT family protein
L3_128_361G1_scaffold_121_10
unknown

Not on your lists

8578..8913
DNA (336bp) protein (112aa)

This feature has no annotations

L3_128_361G1_scaffold_121_11
Clostridium sp. CAG:780, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9194..9445)
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:780 RepID=R5Q5D5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCZ17461.1}; TaxID=1262839 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:780.;"
hypothetical protein
L3_128_361G1_scaffold_121_12
Clostridium sp. CAG:793, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9600..10445
DNA (846bp) protein (282aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:793 RepID=R5N799_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY99915.1}; TaxID=1262840 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:793.;"
hypothetical protein
L3_128_361G1_scaffold_121_13
Clostridium sp. CAG:793, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10405..11547
DNA (1143bp) protein (381aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:793 RepID=R5N799_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY99915.1}; TaxID=1262840 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:793.;"
hypothetical protein
L3_128_361G1_scaffold_121_14
Peptococcaceae bacterium BRH_c8a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11721..12485
DNA (765bp) protein (255aa)
Site-specific recombinase XerD n=1 Tax=Desulfosporosinus youngiae DSM 17734 RepID=H5XVD5_9FIRM
Integrase {ECO:0000313|EMBL:KJS11613.1}; TaxID=1629715 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacterium BRH_c8a.;"
site-specific recombinase XerD
L3_128_361G1_scaffold_121_15
Desulfotomaculum gibsoniae, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12583..13701
DNA (1119bp) protein (373aa)
Putative transposase n=1 Tax=Desulfotomaculum gibsoniae DSM 7213 RepID=R4KHY3_9FIRM
Putative transposase
Putative transposase {ECO:0000313|EMBL:AGL00120.1}; TaxID=767817 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum gibsoniae DSM 7213.;"
L3_128_361G1_scaffold_121_16
Clostridium sp. CAG:793, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13828..15177
DNA (1350bp) protein (450aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:793 RepID=R5N799_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY99915.1}; TaxID=1262840 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:793.;"
hypothetical protein
L3_128_361G1_scaffold_121_17
Clostridium sp. CAG:793, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15277..15795
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:793 RepID=R5N799_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY99915.1}; TaxID=1262840 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:793.;"
hypothetical protein
L3_128_361G1_scaffold_121_18
unknown

Not on your lists

15753..15848
DNA (96bp) protein (32aa)

This feature has no annotations

L3_128_361G1_scaffold_121_19
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15896..16432)
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6NCX0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC06169.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
hypothetical protein
L3_128_361G1_scaffold_121_20
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16577..17533
DNA (957bp) protein (319aa)
L-lactate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00488}; Short=L-LDH {ECO:0000256|HAMAP-Rule:MF_00488};; EC=1.1.1.27 {ECO:0000256|HAMAP-Rule:MF_00488};; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
L-lactate dehydrogenase n=1 Tax=Clostridium sp. CAG:440 RepID=R7GEV5_9CLOT
ldh; L-lactate dehydrogenase
L3_128_361G1_scaffold_121_21
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17730..17978
DNA (249bp) protein (83aa)
Protein translocase SecG subunit n=1 Tax=Clostridium sp. CAG:343 RepID=R6NDI6_9CLOT
Protein translocase SecG subunit {ECO:0000313|EMBL:CDC06389.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
secG; preprotein translocase subunit SecG
L3_128_361G1_scaffold_121_22
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18189..20315
DNA (2127bp) protein (709aa)
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
Ribonuclease R n=1 Tax=Clostridium sp. CAG:343 RepID=R6N5R1_9CLOT
ribonuclease R
L3_128_361G1_scaffold_121_23
unknown

Not on your lists

comp(20428..20607)
DNA (180bp) protein (60aa)

This feature has no annotations

L3_128_361G1_scaffold_121_24
Clostridium sp. CAG:440, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20623..21843)
DNA (1221bp) protein (407aa)
Germination protein Ger(X)C family n=1 Tax=Clostridium sp. CAG:440 RepID=R7GEA4_9CLOT
Germination protein Ger(X)C family {ECO:0000313|EMBL:CDE25480.1}; TaxID=1262807 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:440.;"
germination protein, Ger(X)C family
L3_128_361G1_scaffold_121_25
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21833..22936)
DNA (1104bp) protein (368aa)
Spore germination protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6N318_9CLOT
Spore germination protein {ECO:0000313|EMBL:CDC06393.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
spore germination protein
L3_128_361G1_scaffold_121_26
Clostridium sp. CAG:440, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22956..24164)
DNA (1209bp) protein (403aa)
GerA spore germination protein n=1 Tax=Clostridium sp. CAG:440 RepID=R7GF87_9CLOT
GerA spore germination protein {ECO:0000313|EMBL:CDE25483.1}; TaxID=1262807 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:440.;"
GerA spore germination protein
L3_128_361G1_scaffold_121_27
Clostridium sp. CAG:440, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24989..26122
DNA (1134bp) protein (378aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:440 RepID=R7GEA8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE25485.1}; TaxID=1262807 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:440.;"
Transglutaminase-like superfamily
L3_128_361G1_scaffold_121_28
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26286..27146
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:343 RepID=R6NHZ2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC05846.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
hypothetical protein
L3_128_361G1_scaffold_121_29
Clostridium sp. CAG:440, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27147..27818
DNA (672bp) protein (224aa)
Cytidylate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; Short=CK {ECO:0000256|HAMAP-Rule:MF_00238};; EC=2.7.4.25 {ECO:0000256|HAMAP-Rule:MF_00238};; Cytidine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; TaxID=1262807 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:440.;"
Cytidylate kinase n=1 Tax=Clostridium sp. CAG:440 RepID=R7GEG2_9CLOT
cytidylate kinase
L3_128_361G1_scaffold_121_30
Clostridium sp. CAG:343, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27862..28458
DNA (597bp) protein (199aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Clostridium sp. CAG:343 RepID=R6P7E5_9CLOT
1-acyl-sn-glycerol-3-phosphate acyltransferase {ECO:0000313|EMBL:CDC05842.1}; TaxID=1262796 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:343.;"
1-acyl-sn-glycerol-3-phosphate acyltransferase
Displaying items 1-30 of 79 in total

View Taxonomy