ggKbase home page

L3_128_361G1_scaffold_225

Search features with annotation key words

Displaying items 1-30 of 52 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_128_361G1_scaffold_225_1
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(299..1351)
DNA (1053bp) protein (351aa)
Phage integrase family protein n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZBA5_EUBR3
phage integrase family protein
Phage integrase family protein {ECO:0000313|EMBL:ACR74180.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L3_128_361G1_scaffold_225_2
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1371..1595)
DNA (225bp) protein (75aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 5_1_63FAA RepID=E5VLD9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFV16252.1}; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
HTH domain.
L3_128_361G1_scaffold_225_3
unknown

Not on your lists

comp(1540..1695)
DNA (156bp) protein (52aa)

This feature has no annotations

L3_128_361G1_scaffold_225_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1679..2923)
DNA (1245bp) protein (415aa)
Putative replication protein mobile element region n=1 Tax=Clostridium difficile T15 RepID=U3XBD6_CLODI
Putative replication protein mobile element region {ECO:0000313|EMBL:CCL23638.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
replication initiation factor
L3_128_361G1_scaffold_225_5
Lactobacillus curvatus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

3346..3873
DNA (528bp) protein (176aa)
Helix-turn-helix family protein n=1 Tax=Lactobacillus curvatus CRL 705 RepID=G6CF93_LACCU
Helix-turn-helix family protein {ECO:0000313|EMBL:EHE85785.1}; TaxID=1074451 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus curvatus CRL 705.;"
transcriptional regulator, xre family protein
L3_128_361G1_scaffold_225_6
Lachnospiraceae bacterium 9_1_43BFAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4133..5326)
DNA (1194bp) protein (398aa)
translation elongation factor 1A (EF-1A/EF-Tu) (EC:3.6.5.3)
Elongation factor Tu n=2 Tax=Lachnospiraceae RepID=F3AMR5_9FIRM
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=658088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 9_1_43BFAA.;"
L3_128_361G1_scaffold_225_7
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5476..7593)
DNA (2118bp) protein (706aa)
Elongation factor G n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BBL4_9FIRM
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
elongation factor G
L3_128_361G1_scaffold_225_8
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(7611..8081)
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BBL5_9FIRM
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
30S ribosomal protein S7
L3_128_361G1_scaffold_225_9
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(8278..8697)
DNA (420bp) protein (140aa)
30S ribosomal protein S12 n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BBL6_9FIRM
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
SSU ribosomal protein S12P
L3_128_361G1_scaffold_225_10
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8866..9594)
DNA (729bp) protein (243aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BBL7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG82328.1}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
two component AraC family transcriptional regulator
L3_128_361G1_scaffold_225_11
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9683..10960)
DNA (1278bp) protein (426aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BBL8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG82329.1}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
family 1 extracellular solute-binding protein
L3_128_361G1_scaffold_225_12
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10957..12804)
DNA (1848bp) protein (616aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BBL9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG82330.1}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
signal transduction histidine kinase, LytS
L3_128_361G1_scaffold_225_13
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12889..14310)
DNA (1422bp) protein (474aa)
Aminoacyl-histidine dipeptidase n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BBM0_9FIRM
Aminoacyl-histidine dipeptidase {ECO:0000313|EMBL:EGG82331.1}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
pepD; aminoacyl-histidine dipeptidase
L3_128_361G1_scaffold_225_14
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14500..15042
DNA (543bp) protein (181aa)
Sporulation transcription factor Spo0A n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BBM1_9FIRM
Sporulation transcription factor Spo0A {ECO:0000313|EMBL:EGG82332.1}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
sporulation transcription factor Spo0A
L3_128_361G1_scaffold_225_15
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15115..16200)
DNA (1086bp) protein (362aa)
putative Xaa-Pro dipeptidase (EC:3.4.13.9)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BBM2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG82333.1}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
L3_128_361G1_scaffold_225_16
unknown

Not on your lists

comp(16242..16355)
DNA (114bp) protein (38aa)

This feature has no annotations

L3_128_361G1_scaffold_225_17
unknown

Not on your lists

comp(16352..16453)
DNA (102bp) protein (34aa)

This feature has no annotations

L3_128_361G1_scaffold_225_18
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16493..16777)
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BBM4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG82335.1}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
Uncharacterized protein conserved in bacteria (DUF2325).
L3_128_361G1_scaffold_225_19
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16789..17382)
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BBM5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG82336.1}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
hypothetical protein
L3_128_361G1_scaffold_225_20
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17558..18046)
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BBM6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG82337.1}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
L3_128_361G1_scaffold_225_21
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18128..19762)
DNA (1635bp) protein (545aa)
Thiol reductant ABC exporter, CydC subunit n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BBM7_9FIRM
Thiol reductant ABC exporter, CydC subunit {ECO:0000313|EMBL:EGG82338.1}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
ABC-type multidrug transport system, ATPase and permease components
L3_128_361G1_scaffold_225_22
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19755..21494)
DNA (1740bp) protein (580aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BBM8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG82339.1}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components
L3_128_361G1_scaffold_225_23
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21484..21687)
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BBM9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG82340.1}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
L3_128_361G1_scaffold_225_24
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21817..22653)
DNA (837bp) protein (279aa)
DegV family EDD domain-containing protein n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BBN0_9FIRM
DegV family EDD domain-containing protein {ECO:0000313|EMBL:EGG82341.1}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
hypothetical protein
L3_128_361G1_scaffold_225_25
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22745..24910)
DNA (2166bp) protein (722aa)
Ferrous iron transporter B n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BBN2_9FIRM
Ferrous iron transporter B {ECO:0000313|EMBL:EGG82343.1}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
ferrous iron transport protein B
L3_128_361G1_scaffold_225_26
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24978..25199)
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BBN3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG82344.1}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
Fe2+ transport system protein A
L3_128_361G1_scaffold_225_27
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25214..25426)
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BBN4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG82345.1}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
FeoA family protein
L3_128_361G1_scaffold_225_28
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25598..25963
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BBN5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG82346.1}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
Mn-dependent transcriptional regulator
L3_128_361G1_scaffold_225_29
unknown

Not on your lists

25997..26395
DNA (399bp) protein (133aa)

This feature has no annotations

L3_128_361G1_scaffold_225_30
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26383..26997)
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BBN6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG82347.1}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
Displaying items 1-30 of 52 in total

View Taxonomy