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L3_128_361G1_scaffold_617

Search features with annotation key words

Displaying items 1-30 of 58 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_128_361G1_scaffold_617_1
Clostridium sp. CAG:505, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(457..792)
DNA (336bp) protein (112aa)
DNA-binding helix-turn-helix protein n=1 Tax=Clostridium sp. CAG:505 RepID=R7B938_9CLOT
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:CDD60924.1}; TaxID=1262814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:505.;"
XRE family transcriptional regulator
L3_128_361G1_scaffold_617_2
Firmicutes bacterium CAG:466, Firmicutes, Bacteria

Not on your lists

940..1263
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:466 RepID=R6QW36_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC26167.1}; TaxID=1263025 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:466.;"
Helix-turn-helix.
L3_128_361G1_scaffold_617_3
Clostridium sp. CAG:505, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1344..3791)
DNA (2448bp) protein (816aa)
Alpha-1,4 glucan phosphorylase {ECO:0000256|RuleBase:RU000587}; EC=2.4.1.1 {ECO:0000256|RuleBase:RU000587};; TaxID=1262814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:505.;"
Phosphorylase n=1 Tax=Clostridium sp. CAG:505 RepID=R7B820_9CLOT
glycosyltransferase family glucan phosphorylase
L3_128_361G1_scaffold_617_4
Clostridium sp. CAG:505, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3933..4397)
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:505 RepID=R7B788_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD60921.1}; TaxID=1262814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:505.;"
L3_128_361G1_scaffold_617_5
Firmicutes bacterium CAG:466, Firmicutes, Bacteria

Not on your lists

comp(4692..5264)
DNA (573bp) protein (191aa)
Chromate transport protein n=1 Tax=Firmicutes bacterium CAG:466 RepID=R6QW42_9FIRM
Chromate transport protein {ECO:0000313|EMBL:CDC26177.1}; TaxID=1263025 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:466.;"
chromate transport protein
L3_128_361G1_scaffold_617_6
Firmicutes bacterium CAG:466, Firmicutes, Bacteria

Not on your lists

comp(5265..5819)
DNA (555bp) protein (185aa)
Chromate transport protein n=2 Tax=Firmicutes RepID=R6PZI9_9FIRM
Chromate transport protein {ECO:0000313|EMBL:CDC26179.1}; TaxID=1263025 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:466.;"
Chromate transporter
L3_128_361G1_scaffold_617_7
Firmicutes bacterium CAG:466, Firmicutes, Bacteria

Not on your lists

comp(5853..6929)
DNA (1077bp) protein (359aa)
Peptide chain release factor 1 n=1 Tax=Firmicutes bacterium CAG:466 RepID=R6PRM8_9FIRM
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=1263025 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:466.;"
peptide chain release factor 1
L3_128_361G1_scaffold_617_8
Clostridium sp. CAG:505, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6922..7743)
DNA (822bp) protein (274aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-(glutamine-N5) MTase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-glutamine N-methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; TaxID=1262814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:505.;"
Release factor glutamine methyltransferase n=1 Tax=Clostridium sp. CAG:505 RepID=R7B7B6_9CLOT
protein-(glutamine-N5) methyltransferase, release factor-specific
L3_128_361G1_scaffold_617_9
Firmicutes bacterium CAG:466, Firmicutes, Bacteria

Not on your lists

comp(7778..8689)
DNA (912bp) protein (304aa)
Uncharacterized protein n=2 Tax=Firmicutes RepID=R6QW45_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC26182.1}; TaxID=1263025 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:466.;"
hypothetical protein
L3_128_361G1_scaffold_617_10
Clostridium sp. CAG:505, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8823..9026)
DNA (204bp) protein (68aa)
50S ribosomal protein L31 n=2 Tax=Firmicutes RepID=R6PP71_9FIRM
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; TaxID=1262814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:505.;"
ribosomal protein L31
L3_128_361G1_scaffold_617_11
Clostridium sp. CAG:505, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9159..10547)
DNA (1389bp) protein (463aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=1262814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:505.;"
Transcription termination factor Rho n=1 Tax=Clostridium sp. CAG:505 RepID=R7B814_9CLOT
transcription termination factor Rho
L3_128_361G1_scaffold_617_12
Clostridium sp. CAG:505, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10591..11703)
DNA (1113bp) protein (371aa)
LysM domain n=1 Tax=Clostridium sp. CAG:505 RepID=R7AJA4_9CLOT
LysM domain {ECO:0000313|EMBL:CDD60913.1}; TaxID=1262814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:505.;"
hypothetical protein
L3_128_361G1_scaffold_617_13
Clostridium sp. CAG:505, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11927..13537)
DNA (1611bp) protein (537aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:505 RepID=R7B785_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD60912.1}; TaxID=1262814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:505.;"
hypothetical protein
L3_128_361G1_scaffold_617_14
Clostridium sp. CAG:505, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13742..14395
DNA (654bp) protein (218aa)
Negative regulator of genetic competence n=1 Tax=Clostridium sp. CAG:505 RepID=R7B6Z3_9CLOT
Negative regulator of genetic competence {ECO:0000313|EMBL:CDD60911.1}; TaxID=1262814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:505.;"
negative regulator of genetic competence
L3_128_361G1_scaffold_617_15
Firmicutes bacterium CAG:466, Firmicutes, Bacteria

Not on your lists

comp(14436..15119)
DNA (684bp) protein (228aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:466 RepID=R6PP75_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC26188.1}; TaxID=1263025 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:466.;"
TIGR02453 family protein
L3_128_361G1_scaffold_617_16
Clostridium sp. CAG:505, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15252..17231)
DNA (1980bp) protein (660aa)
Putative K(+)-stimulated pyrophosphate-energized sodium pump {ECO:0000256|HAMAP-Rule:MF_01129}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_01129};; Membrane-bound sodium-translocating pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01129}; Pyrophosphate-energized inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01129}; TaxID=1262814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:505.;"
vacuolar-type H(+)-translocating pyrophosphatase (EC:3.6.1.1)
Putative K(+)-stimulated pyrophosphate-energized sodium pump n=2 Tax=Firmicutes RepID=R6PRN6_9FIRM
L3_128_361G1_scaffold_617_17
unknown

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comp(17504..17623)
DNA (120bp) protein (40aa)

This feature has no annotations

L3_128_361G1_scaffold_617_18
Firmicutes bacterium CAG:466, Firmicutes, Bacteria

Not on your lists

comp(17698..18597)
DNA (900bp) protein (300aa)
Auxin Efflux Carrier n=1 Tax=Firmicutes bacterium CAG:466 RepID=R6Q5X9_9FIRM
Auxin Efflux Carrier {ECO:0000313|EMBL:CDC26191.1}; TaxID=1263025 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:466.;"
auxin efflux carrier
L3_128_361G1_scaffold_617_19
Clostridium sp. CAG:505, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18730..19281)
DNA (552bp) protein (184aa)
PAP2 family protein n=1 Tax=Clostridium sp. CAG:505 RepID=R7B929_9CLOT
PAP2 family protein {ECO:0000313|EMBL:CDD60907.1}; TaxID=1262814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:505.;"
membrane-associated phospholipid phosphatase
L3_128_361G1_scaffold_617_20
Clostridium sp. CAG:505, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19306..19872)
DNA (567bp) protein (189aa)
Putative manganese efflux pump MntP n=1 Tax=Clostridium sp. CAG:505 RepID=R7B809_9CLOT
Putative manganese efflux pump MntP {ECO:0000256|HAMAP-Rule:MF_01521}; TaxID=1262814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:505.;"
Predicted membrane protein
L3_128_361G1_scaffold_617_21
Clostridium sp. CAG:505, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20144..20668)
DNA (525bp) protein (175aa)
Membrane spanning protein n=1 Tax=Clostridium sp. CAG:505 RepID=R7AR72_9CLOT
Membrane spanning protein {ECO:0000313|EMBL:CDD60905.1}; TaxID=1262814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:505.;"
membrane spanning protein
L3_128_361G1_scaffold_617_22
unknown

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comp(20665..21243)
DNA (579bp) protein (193aa)

This feature has no annotations

L3_128_361G1_scaffold_617_23
Clostridium sp. CAG:505, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21733..22026)
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:505 RepID=R7B779_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD60904.1}; TaxID=1262814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:505.;"
hypothetical protein
L3_128_361G1_scaffold_617_24
Clostridium sp. CAG:505, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22041..22547)
DNA (507bp) protein (169aa)
Spore cortex protein YabQ (Spore_YabQ) n=1 Tax=Clostridium sp. CAG:505 RepID=R7AJ93_9CLOT
Spore cortex protein YabQ (Spore_YabQ) {ECO:0000313|EMBL:CDD60903.1}; TaxID=1262814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:505.;"
hypothetical protein
L3_128_361G1_scaffold_617_25
Clostridium sp. CAG:505, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22562..22846)
DNA (285bp) protein (95aa)
Sporulation protein YabP n=1 Tax=Clostridium sp. CAG:505 RepID=R7B6Y8_9CLOT
Sporulation protein YabP {ECO:0000313|EMBL:CDD60902.1}; TaxID=1262814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:505.;"
sporulation protein YabP
L3_128_361G1_scaffold_617_26
Clostridium sp. CAG:505, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22895..23137)
DNA (243bp) protein (81aa)
Uncharacterized protein n=2 Tax=Firmicutes RepID=R6PRP9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD60901.1}; TaxID=1262814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:505.;"
Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)
L3_128_361G1_scaffold_617_27
Firmicutes bacterium CAG:466, Firmicutes, Bacteria

Not on your lists

comp(23140..23469)
DNA (330bp) protein (110aa)
Regulator of competence-specific genes n=1 Tax=Firmicutes bacterium CAG:466 RepID=R6QW64_9FIRM
Regulator of competence-specific genes {ECO:0000313|EMBL:CDC26207.1}; TaxID=1263025 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:466.;"
Regulator of competence-specific genes
L3_128_361G1_scaffold_617_28
Clostridium sp. CAG:505, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23547..23822)
DNA (276bp) protein (92aa)
Uncharacterized protein n=2 Tax=Firmicutes RepID=R6Q5Z9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD60899.1}; TaxID=1262814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:505.;"
Bacterial nucleoid DNA-binding protein
L3_128_361G1_scaffold_617_29
Clostridium sp. CAG:505, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23849..24640)
DNA (792bp) protein (264aa)
MazG family protein n=1 Tax=Clostridium sp. CAG:505 RepID=R7AJ87_9CLOT
MazG family protein {ECO:0000313|EMBL:CDD60898.1}; TaxID=1262814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:505.;"
MazG family protein
L3_128_361G1_scaffold_617_30
Firmicutes bacterium CAG:466, Firmicutes, Bacteria

Not on your lists

24830..25684
DNA (855bp) protein (285aa)
sulfide dehydrogenase (flavoprotein) subunit SudB (EC:1.18.1.2 1.97.-.-)
Uncharacterized protein n=2 Tax=Firmicutes RepID=R6PRQ9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC26215.1}; TaxID=1263025 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:466.;"
Displaying items 1-30 of 58 in total

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