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L3_128_361G1_scaffold_1076

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_128_361G1_scaffold_1076_1
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..333)
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDK9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46905.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_128_361G1_scaffold_1076_2
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(523..1140)
DNA (618bp) protein (206aa)
Transcriptional regulator, TetR family n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EBY1_9CLOT
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EEG31042.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
Transcriptional regulator
L3_128_361G1_scaffold_1076_3
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2407..2628)
DNA (222bp) protein (74aa)
Helix-turn-helix n=2 Tax=Ruminococcus RepID=D4L594_9FIRM
Helix-turn-helix.
Helix-turn-helix {ECO:0000313|EMBL:CBL14789.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_128_361G1_scaffold_1076_4
Clostridium sp. CAG:505, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2730..2981
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:505 RepID=R7AMQ3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD62068.1}; TaxID=1262814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:505.;"
L3_128_361G1_scaffold_1076_5
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3205..4677)
DNA (1473bp) protein (491aa)
Type II restriction-modification system restriction subunit putative n=1 Tax=Clostridium sp. CAG:169 RepID=R6BMM1_9CLOT
Type II restriction-modification system restriction subunit putative {ECO:0000313|EMBL:CDA62189.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
LlaJI restriction endonuclease.
L3_128_361G1_scaffold_1076_6
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4674..8252)
DNA (3579bp) protein (1193aa)
Type II restriction-modification system restriction subunit (EC:3.1.21.3)
ATPase family associated with various cellular activities (AAA) n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B480_RUMGN
ATPase family associated with various cellular activities (AAA) {ECO:0000313|EMBL:EDN77157.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
L3_128_361G1_scaffold_1076_7
Syntrophothermus lipocalidus, Syntrophothermus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8277..9371)
DNA (1095bp) protein (365aa)
Cytosine-specific methyltransferase {ECO:0000256|RuleBase:RU000417}; EC=2.1.1.37 {ECO:0000256|RuleBase:RU000417};; TaxID=643648 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Syntrophomonadaceae; Syntrophothermus.;" source="Syntrophothermus lipocalidus (strain DSM 12680 / TGB-C1).;"
Cytosine-specific methyltransferase n=1 Tax=Syntrophothermus lipocalidus (strain DSM 12680 / TGB-C1) RepID=D7CPR9_SYNLT
DNA-cytosine methyltransferase
L3_128_361G1_scaffold_1076_8
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9410..9601)
DNA (192bp) protein (64aa)
transcriptional regulator n=1 Tax=Clostridium sporosphaeroides RepID=UPI000375AE64
putative AlpA family transcriptional regulator
Putative AlpA family transcriptional regulator {ECO:0000313|EMBL:BAL01389.1}; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 /; Sjm18-20).;"
L3_128_361G1_scaffold_1076_9
Firmicutes bacterium CAG:240, Firmicutes, Bacteria

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comp(9964..10431)
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:240 RepID=R6IGQ7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB44526.1}; TaxID=1263013 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:240.;"
hypothetical protein
L3_128_361G1_scaffold_1076_10
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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10788..11225
DNA (438bp) protein (146aa)
DNA-binding helix-turn-helix protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YT54_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EHM44325.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
helix-turn-helix domain-containing protein
L3_128_361G1_scaffold_1076_11
unknown

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comp(11208..11375)
DNA (168bp) protein (56aa)

This feature has no annotations

L3_128_361G1_scaffold_1076_12
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11353..11733)
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBI1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47709.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_128_361G1_scaffold_1076_13
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11964..12593
DNA (630bp) protein (210aa)
Chloramphenicol acetyltransferase {ECO:0000256|RuleBase:RU000503}; EC=2.3.1.28 {ECO:0000256|RuleBase:RU000503};; TaxID=610130 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533; / WM1).;"
Chloramphenicol acetyltransferase n=1 Tax=Streptococcus suis (strain BM407) RepID=C6GT52_STRS4
cat; chloramphenicol acetyltransferase
L3_128_361G1_scaffold_1076_14
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12597..13340
DNA (744bp) protein (248aa)
4Fe-4S binding domain protein n=1 Tax=Clostridium sp. CAG:242 RepID=R6DCL9_9CLOT
4Fe-4S binding domain protein {ECO:0000313|EMBL:CDA75592.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
hypothetical protein
L3_128_361G1_scaffold_1076_15
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13354..13800
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:242 RepID=R6CFY0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA75593.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
hypothetical protein
L3_128_361G1_scaffold_1076_16
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13850..14302)
DNA (453bp) protein (151aa)
Ribosomal-protein-alanine N-acetyltransferase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBH2_9FIRM
Ribosomal-protein-alanine N-acetyltransferase {ECO:0000313|EMBL:EGJ47700.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Acetyltransferases
L3_128_361G1_scaffold_1076_17
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14302..14832)
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X945_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48014.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Dihydrofolate reductase
L3_128_361G1_scaffold_1076_18
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14961..15869
DNA (909bp) protein (303aa)
HTH domain protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P211_9FIRM
HTH domain protein {ECO:0000313|EMBL:EDM97681.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
helix-turn-helix type 11 domain-containing protein
L3_128_361G1_scaffold_1076_19
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15871..16512
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBG9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47697.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_128_361G1_scaffold_1076_20
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16517..16912
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBG7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47695.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_128_361G1_scaffold_1076_21
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16987..17067
DNA (81bp) protein (27aa)
Helix-turn-helix domain protein n=2 Tax=Clostridium RepID=R6PD04_9CLOT
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EDO60693.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
putative Xre family DNA-binding protein
Displaying 21 items

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