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L3_128_361G1_scaffold_1169

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_128_361G1_scaffold_1169_1
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2..646)
DNA (645bp) protein (215aa)
Peptidase, S41 family {ECO:0000313|EMBL:EDM98661.1}; EC=3.4.21.- {ECO:0000313|EMBL:EDM98661.1};; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
Peptidase, S41 family n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NZ12_9FIRM
carboxyl-terminal protease
L3_128_361G1_scaffold_1169_2
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(726..1994)
DNA (1269bp) protein (423aa)
Peptidase, M23 family n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YWX5_9FIRM
Peptidase, M23 family {ECO:0000313|EMBL:EHM38234.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
putative metalloendopeptidase
L3_128_361G1_scaffold_1169_3
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2014..2901)
DNA (888bp) protein (296aa)
Cell division protein FtsX n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2CXE0_9CLOT
Cell division protein FtsX {ECO:0000256|PIRNR:PIRNR003097}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
ftsX; cell division protein FtsX
L3_128_361G1_scaffold_1169_4
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2888..3577)
DNA (690bp) protein (230aa)
Cell division ATP-binding protein FtsE n=3 Tax=Clostridiales RepID=H1CF63_9FIRM
Cell division ATP-binding protein FtsE {ECO:0000313|EMBL:EHO32802.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
ftsE; cell division protein FtsE
L3_128_361G1_scaffold_1169_5
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3735..4826)
DNA (1092bp) protein (364aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=U2BJF5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHO32803.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
hypothetical protein
L3_128_361G1_scaffold_1169_6
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4979..5716)
DNA (738bp) protein (246aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
rsuA; pseudouridine synthase RsuA (EC:5.4.99.-)
Pseudouridine synthase n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NZ18_9FIRM
L3_128_361G1_scaffold_1169_7
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5837..6313
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2B1B5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI71959.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
hypothetical protein
L3_128_361G1_scaffold_1169_8
unknown

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comp(6361..6963)
DNA (603bp) protein (201aa)

This feature has no annotations

L3_128_361G1_scaffold_1169_9
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6968..7906)
DNA (939bp) protein (313aa)
Putative small-conductance mechanosensitive channel n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YXJ6_9FIRM
Putative small-conductance mechanosensitive channel {ECO:0000313|EMBL:EHM37235.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
mechanosensitive ion channel MscS
L3_128_361G1_scaffold_1169_10
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8069..9268)
DNA (1200bp) protein (400aa)
Elongation factor Tu n=3 Tax=Clostridiales RepID=G9YXJ9_9FIRM
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
tuf; elongation factor Tu
L3_128_361G1_scaffold_1169_11
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9375..11483)
DNA (2109bp) protein (703aa)
Elongation factor G n=3 Tax=Clostridiales RepID=G9YXK0_9FIRM
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
fusA; elongation factor G
L3_128_361G1_scaffold_1169_12
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(11499..11969)
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CF71_9FIRM
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
rpsG; 30S ribosomal protein S7
L3_128_361G1_scaffold_1169_13
Firmicutes bacterium CAG:114, Firmicutes, Bacteria

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comp(12179..12613)
DNA (435bp) protein (145aa)
30S ribosomal protein S12 n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5HEX9_9FIRM
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1263001 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:114.;"
rpsL; 30S ribosomal protein S12
L3_128_361G1_scaffold_1169_14
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12680..12931)
DNA (252bp) protein (84aa)
Ribosomal protein L7ae family protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NZ26_9FIRM
Ribosomal protein L7ae family protein {ECO:0000313|EMBL:EDM98675.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
50S ribosomal protein L7
L3_128_361G1_scaffold_1169_15
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13215..15647)
DNA (2433bp) protein (811aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
rpoC; DNA-directed RNA polymerase beta' subunit (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CF79_9FIRM
Displaying 15 items

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