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L3_128_361G1_scaffold_613

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_128_361G1_scaffold_613_1
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2..862)
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XB40_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47568.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
alpha/beta family hydrolase
L3_128_361G1_scaffold_613_2
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(846..1442)
DNA (597bp) protein (199aa)
Hexapeptide-repeat containing-acetyltransferase n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6UI14_9FIRM
Hexapeptide-repeat containing-acetyltransferase {ECO:0000313|EMBL:CDC70442.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
acetyltransferase
L3_128_361G1_scaffold_613_3
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1585..2478
DNA (894bp) protein (298aa)
Transcriptional regulator, LysR family n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P239_9FIRM
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EDM97709.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
LysR family transcriptional regulator
L3_128_361G1_scaffold_613_4
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2571..3131)
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XB53_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47581.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
flavoredoxin
L3_128_361G1_scaffold_613_5
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3186..4892)
DNA (1707bp) protein (569aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XB29_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47557.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Predicted ATPase of the ABC class
L3_128_361G1_scaffold_613_6
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4952..5497)
DNA (546bp) protein (182aa)
Transcriptional regulator, TetR family n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6L962_9FIRM
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EET62801.1}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
AcrR; transcriptional regulator
L3_128_361G1_scaffold_613_7
Firmicutes bacterium CAG:240, Firmicutes, Bacteria

Not on your lists

5638..6525
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:240 RepID=R6I4T6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB44325.1}; TaxID=1263013 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:240.;"
EDD domain protein, DegV family
L3_128_361G1_scaffold_613_8
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6651..7808)
DNA (1158bp) protein (386aa)
4Fe-4S binding domain protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NRH9_9FIRM
4Fe-4S binding domain protein {ECO:0000313|EMBL:EDN01239.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
aldo/keto reductase
L3_128_361G1_scaffold_613_9
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7951..8310
DNA (360bp) protein (120aa)
Transcriptional regulator, HxlR family n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NRH8_9FIRM
Transcriptional regulator, HxlR family {ECO:0000313|EMBL:EDN01238.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
hxlR; transcriptional regulator
L3_128_361G1_scaffold_613_10
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8549..9091)
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6IW14_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB42182.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
hypothetical protein
L3_128_361G1_scaffold_613_11
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9088..10827)
DNA (1740bp) protein (580aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
ATP-dependent metalloprotease FtsH (EC:3.4.24.-)
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LBD6_9FIRM
L3_128_361G1_scaffold_613_12
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10918..11349)
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LBD5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EET62266.1}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
L3_128_361G1_scaffold_613_13
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11486..12031)
DNA (546bp) protein (182aa)
Transcriptional regulator, TetR family n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LBD4_9FIRM
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EET62265.1}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
TetR family transcriptional regulator
L3_128_361G1_scaffold_613_14
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

Not on your lists

comp(12408..13370)
DNA (963bp) protein (321aa)
Restriction endonuclease n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6DTN6_9FIRM
Restriction endonuclease {ECO:0000313|EMBL:CDA81302.1}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
restriction endonuclease
L3_128_361G1_scaffold_613_15
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

13777..14301
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2ZIG7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL14325.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
hypothetical protein
L3_128_361G1_scaffold_613_16
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14405..15442
DNA (1038bp) protein (346aa)
Peptidase, M23 family n=2 Tax=Clostridiales RepID=G9YM87_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF55757.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
putative metalloendopeptidase
L3_128_361G1_scaffold_613_17
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15446..16099
DNA (654bp) protein (218aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1C7G3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF55756.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
Peptidase family M50.
L3_128_361G1_scaffold_613_18
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


16186..16527
DNA (342bp) protein (114aa)
50S ribosomal protein L19 n=3 Tax=Clostridiales RepID=G9YM89_9FIRM
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
hypothetical protein
L3_128_361G1_scaffold_613_19
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16734..17627
DNA (894bp) protein (298aa)
Ribosome biogenesis GTPase A n=3 Tax=Clostridiales RepID=H1C7G0_9FIRM
Ribosome biogenesis GTPase A {ECO:0000256|PIRNR:PIRNR006230}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
putative GTP-binding protein
L3_128_361G1_scaffold_613_20
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

17614..18228
DNA (615bp) protein (205aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
rnhB; ribonuclease HII (EC:3.1.26.4)
Ribonuclease HII n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YCV6_9FIRM
L3_128_361G1_scaffold_613_21
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18225..18587
DNA (363bp) protein (121aa)
UPF0102 protein HMPREF0372_00614 n=3 Tax=Clostridiales RepID=G9YM93_9FIRM
UPF0102 protein HMPREF0239_01561 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
hypothetical protein
L3_128_361G1_scaffold_613_22
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18622..19560
DNA (939bp) protein (313aa)
membrane dipeptidase (EC:3.4.13.19)
Renal dipeptidase family protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NUN7_9FIRM
Renal dipeptidase family protein {ECO:0000313|EMBL:EDN00088.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
L3_128_361G1_scaffold_613_23
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19548..21035
DNA (1488bp) protein (496aa)
thrC; threonine synthase (EC:4.2.3.1)
Threonine synthase n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1C7F6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF55749.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
L3_128_361G1_scaffold_613_24
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21063..21755
DNA (693bp) protein (231aa)
Ser/Thr phosphatase family protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NUN9_9FIRM
Ser/Thr phosphatase family protein {ECO:0000313|EMBL:EDN00090.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
putative hydrolase
L3_128_361G1_scaffold_613_25
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21903..23306
DNA (1404bp) protein (468aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000256|RuleBase:RU003914}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-Rule:MF_00303}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
Trigger factor n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1C7F4_9FIRM
tig; trigger factor
L3_128_361G1_scaffold_613_26
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23472..24059
DNA (588bp) protein (196aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8W5N9_9CLOT
ATP-dependent Clp protease, proteolytic subunit ClpP
L3_128_361G1_scaffold_613_27
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24144..25466
DNA (1323bp) protein (441aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=3 Tax=Clostridiales RepID=G9YM99_9FIRM
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
L3_128_361G1_scaffold_613_28
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25540..27963
DNA (2424bp) protein (808aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
lon; ATP-dependent protease La (EC:3.4.21.53)
Lon protease n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2BHS5_9CLOT
L3_128_361G1_scaffold_613_29
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28021..28617
DNA (597bp) protein (199aa)
GTPase (EC:3.6.1.-)
Probable GTP-binding protein EngB n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1C7F0_9FIRM
Probable GTP-binding protein EngB {ECO:0000256|HAMAP-Rule:MF_00321, ECO:0000256|SAAS:SAAS00023450}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
L3_128_361G1_scaffold_613_30
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28618..29214
DNA (597bp) protein (199aa)
ureidoglycolate lyase (EC:4.3.2.3)
FAH family protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NUP5_9FIRM
FAH family protein {ECO:0000313|EMBL:EDN00096.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
Displaying 30 items

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