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L3_128_361G1_scaffold_482

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Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_128_361G1_scaffold_482_1
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

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1..123
DNA (123bp) protein (41aa)
Uncharacterized protein n=2 Tax=root RepID=R6M8B1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB94755.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
integrase
L3_128_361G1_scaffold_482_2
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(181..930)
DNA (750bp) protein (250aa)
IstB domain protein ATP-binding protein n=1 Tax=Clostridium botulinum BKT015925 RepID=F4A5G6_CLOBO
IstB domain-containing protein ATP-binding protein
IstB domain protein ATP-binding protein {ECO:0000313|EMBL:AEB76713.1}; TaxID=929506 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum BKT015925.;"
L3_128_361G1_scaffold_482_3
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(917..1288)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=N9YZ21_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ29508.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
integrase catalytic subunit
L3_128_361G1_scaffold_482_4
[Clostridium] spiroforme, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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1590..1928
DNA (339bp) protein (113aa)
Transposase n=1 Tax=Clostridium spiroforme DSM 1552 RepID=B1C2J0_9FIRM
Transposase {ECO:0000313|EMBL:EDS74675.1}; TaxID=428126 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] spiroforme DSM 1552.;"
Transposase and inactivated derivatives
L3_128_361G1_scaffold_482_5
[Clostridium] spiroforme, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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2022..2597
DNA (576bp) protein (192aa)
Transposase n=1 Tax=Clostridium spiroforme DSM 1552 RepID=B1C2J0_9FIRM
Transposase {ECO:0000313|EMBL:EDS74675.1}; TaxID=428126 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] spiroforme DSM 1552.;"
Transposase IS204/IS1001/IS1096/IS1165
L3_128_361G1_scaffold_482_6
Coprobacillus sp. 29_1, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(2774..4408)
DNA (1635bp) protein (545aa)
Glycerone kinase n=1 Tax=Coprobacillus sp. 29_1 RepID=E7GDJ3_9FIRM
Glycerone kinase {ECO:0000313|EMBL:EFW04044.1}; TaxID=469596 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 29_1.;"
DAK2 domain-containing protein YloV
L3_128_361G1_scaffold_482_7
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(4427..4783)
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5QSI7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ23947.1}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
alkaline shock protein
L3_128_361G1_scaffold_482_8
Catenibacterium sp. CAG:290, Catenibacterium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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5018..5203
DNA (186bp) protein (62aa)
50S ribosomal protein L28 n=2 Tax=Catenibacterium RepID=E2NPH7_9FIRM
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=1262767 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Catenibacterium; environmental samples.;" source="Catenibacterium sp. CAG:290.;"
rpmB; 50S ribosomal protein L28
L3_128_361G1_scaffold_482_9
Coprobacillus sp. 29_1, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(5286..6413)
DNA (1128bp) protein (376aa)
Chaperone protein DnaJ n=1 Tax=Coprobacillus sp. 29_1 RepID=E7GDK0_9FIRM
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; TaxID=469596 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 29_1.;"
dnaJ; chaperone protein DnaJ
L3_128_361G1_scaffold_482_10
[Clostridium] spiroforme, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(6470..8269)
DNA (1800bp) protein (600aa)
Chaperone protein DnaK n=1 Tax=Clostridium spiroforme DSM 1552 RepID=B1C0Y4_9FIRM
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; TaxID=428126 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] spiroforme DSM 1552.;"
dnaK; chaperone protein DnaK
L3_128_361G1_scaffold_482_11
[Clostridium] spiroforme, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(8289..8846)
DNA (558bp) protein (186aa)
Protein GrpE n=1 Tax=Clostridium spiroforme DSM 1552 RepID=B1C0Y5_9FIRM
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=428126 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] spiroforme DSM 1552.;"
heat shock protein GrpE
L3_128_361G1_scaffold_482_12
[Clostridium] spiroforme, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(8858..9883)
DNA (1026bp) protein (342aa)
Heat-inducible transcription repressor hrcA n=1 Tax=Clostridium spiroforme DSM 1552 RepID=B1C0Y6_9FIRM
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081, ECO:0000256|SAAS:SAAS00101987}; TaxID=428126 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] spiroforme DSM 1552.;"
hrcA; heat-inducible transcription repressor
L3_128_361G1_scaffold_482_13
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(10281..11408)
DNA (1128bp) protein (376aa)
Putative oxygen-independent coproporphyrinogen III oxidase n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5QCC9_9FIRM
Putative oxygen-independent coproporphyrinogen III oxidase {ECO:0000313|EMBL:CCZ23954.1}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
oxygen-independent coproporphyrinogen III oxidase 1
L3_128_361G1_scaffold_482_14
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(11408..12619)
DNA (1212bp) protein (404aa)
L-serine ammonia-lyase n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5Q5C1_9FIRM
L-serine ammonia-lyase {ECO:0000313|EMBL:CCZ23955.1}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
sdaA; Serine dehydratase, single chain form
L3_128_361G1_scaffold_482_15
Coprobacillus sp. 29_1, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(12628..13593)
DNA (966bp) protein (322aa)
holA; DNA polymerase delta subunit HolA (EC:2.7.7.7)
Uncharacterized protein n=1 Tax=Coprobacillus sp. 29_1 RepID=E7GDL6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFW03873.1}; TaxID=469596 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 29_1.;"
L3_128_361G1_scaffold_482_16
Coprobacillus sp. 8_2_54BFAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(13607..15580)
DNA (1974bp) protein (658aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. D7 RepID=C3RKD9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHQ48209.1}; TaxID=469597 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 8_2_54BFAA.;"
comEC; Late competence protein ComEC
L3_128_361G1_scaffold_482_17
Catenibacterium mitsuokai, Catenibacterium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(15571..16032)
DNA (462bp) protein (154aa)
ComEA protein n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=E2NPI6_9FIRM
ComEA protein {ECO:0000313|EMBL:EEF94859.1}; TaxID=451640 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Catenibacterium.;" source="Catenibacterium mitsuokai DSM 15897.;"
competence protein
L3_128_361G1_scaffold_482_18
[Clostridium] spiroforme, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(16087..17085)
DNA (999bp) protein (333aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=428126 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] spiroforme DSM 1552.;"
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Clostridium spiroforme DSM 1552 RepID=B1C0Z8_9FIRM
ruvB; Holliday junction ATP-dependent DNA helicase RuvB
L3_128_361G1_scaffold_482_19
Coprobacillus sp. 29_1, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(17094..17651)
DNA (558bp) protein (186aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=469596 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 29_1.;"
ruvA; Holliday junction ATP-dependent DNA helicase RuvA (EC:3.6.1.-)
Holliday junction ATP-dependent DNA helicase RuvA n=1 Tax=Coprobacillus sp. 29_1 RepID=E7GDM0_9FIRM
L3_128_361G1_scaffold_482_20
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17730..18470)
DNA (741bp) protein (247aa)
Putative glutamine amidotransferase n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6SYH5_9CLOT
Putative glutamine amidotransferase {ECO:0000313|EMBL:EKQ51423.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
peptidase C26
L3_128_361G1_scaffold_482_21
Coprobacillus sp. 29_1, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(18682..20232)
DNA (1551bp) protein (517aa)
Helicase n=1 Tax=Coprobacillus sp. 29_1 RepID=E7GD67_9FIRM
Helicase {ECO:0000313|EMBL:EFW03918.1}; TaxID=469596 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 29_1.;"
csdA; ATP-dependent RNA helicase, DEAD/DEAH box family
L3_128_361G1_scaffold_482_22
[Clostridium] spiroforme, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(20341..21714)
DNA (1374bp) protein (458aa)
4-phosphoerythronate dehydrogenase {ECO:0000313|EMBL:EDS74180.1}; EC=1.1.1.290 {ECO:0000313|EMBL:EDS74180.1};; TaxID=428126 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] spiroforme DSM 1552.;"
2-hydroxyacid dehydrogenase (EC:1.1.1.272)
4-phosphoerythronate dehydrogenase n=1 Tax=Clostridium spiroforme DSM 1552 RepID=B1C3E6_9FIRM
L3_128_361G1_scaffold_482_23
Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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21847..23307
DNA (1461bp) protein (487aa)
Cell envelope-like function transcriptional attenuator common domain protein n=1 Tax=Erysipelotrichaceae bacterium 3_1_53 RepID=E2SNG0_9FIRM
Cell envelope-like function transcriptional attenuator common domain protein {ECO:0000313|EMBL:EFP60928.1}; TaxID=658659 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 3_1_53.;"
cell envelope-related transcriptional attenuator
L3_128_361G1_scaffold_482_24
Erysipelotrichaceae bacterium 5_2_54FAA, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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23417..24640
DNA (1224bp) protein (408aa)
Peptidase T {ECO:0000256|SAAS:SAAS00064331}; EC=3.-.-.- {ECO:0000256|SAAS:SAAS00279025};; EC=3.4.11.- {ECO:0000256|SAAS:SAAS00275860};; EC=3.4.11.4 {ECO:0000256|SAAS:SAAS00064282};; TaxID=552396 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 5_2_54FAA.;"
Peptidase T n=2 Tax=Firmicutes RepID=H1BIS2_9FIRM
Peptidase M20B, peptidase T
L3_128_361G1_scaffold_482_25
[Clostridium] spiroforme, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(24858..25334)
DNA (477bp) protein (159aa)
Transcription elongation factor GreA n=1 Tax=Clostridium spiroforme DSM 1552 RepID=B1C0M6_9FIRM
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=428126 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] spiroforme DSM 1552.;"
greA; transcription elongation factor GreA
L3_128_361G1_scaffold_482_26
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(25369..25989)
DNA (621bp) protein (207aa)
Uridine kinase {ECO:0000256|HAMAP-Rule:MF_00551, ECO:0000256|RuleBase:RU003825}; EC=2.7.1.48 {ECO:0000256|HAMAP-Rule:MF_00551, ECO:0000256|RuleBase:RU003825};; Cytidine monophosphokinase {ECO:0000256|HAMAP-Rule:MF_00551}; Uridine monophosphokinase {ECO:0000256|HAMAP-Rule:MF_00551}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
Uridine kinase n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5Q8S4_9FIRM
uridine kinase
L3_128_361G1_scaffold_482_27
Coprobacillus sp. 29_1, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(25986..27233)
DNA (1248bp) protein (416aa)
Peptidase n=1 Tax=Coprobacillus sp. 29_1 RepID=E7G7N9_9FIRM
Peptidase {ECO:0000313|EMBL:EFW05959.1}; TaxID=469596 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 29_1.;"
peptidase U32
L3_128_361G1_scaffold_482_28
[Clostridium] spiroforme, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(27220..28104)
DNA (885bp) protein (295aa)
Peptidase, U32 family {ECO:0000313|EMBL:EDS75363.1}; EC=3.4.-.- {ECO:0000313|EMBL:EDS75363.1};; TaxID=428126 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] spiroforme DSM 1552.;"
Peptidase, U32 family n=1 Tax=Clostridium spiroforme DSM 1552 RepID=B1C0M8_9FIRM
yrrN; peptidase, U32 family small subunit [C1]
L3_128_361G1_scaffold_482_29
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(28101..28718)
DNA (618bp) protein (206aa)
O-methyltransferase n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5Q9A5_9FIRM
O-methyltransferase {ECO:0000313|EMBL:CCZ25123.1}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
O-methyltransferase, family 3
L3_128_361G1_scaffold_482_30
Firmicutes bacterium CAG:145, Firmicutes, Bacteria

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comp(28712..29752)
DNA (1041bp) protein (347aa)
YceG family protein n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6EZC3_9FIRM
YceG family protein {ECO:0000313|EMBL:CDB02489.1}; TaxID=1263005 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:145.;"
hypothetical protein
Displaying items 1-30 of 35 in total

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