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L3_128_361G1_scaffold_743

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_128_361G1_scaffold_743_1
Coprobacillus sp. 3_3_56FAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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281..622
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. 3_3_56FAA RepID=G9R7G7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM87622.1}; TaxID=665941 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 3_3_56FAA.;"
L3_128_361G1_scaffold_743_2
Coprobacillus sp. 3_3_56FAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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753..1718
DNA (966bp) protein (322aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. 3_3_56FAA RepID=G9R7G8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM87623.1}; TaxID=665941 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 3_3_56FAA.;"
Putative viral replication protein.
L3_128_361G1_scaffold_743_3
Coprobacillus sp. 3_3_56FAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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1705..2997
DNA (1293bp) protein (431aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. 3_3_56FAA RepID=G9R7G9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM87624.1}; TaxID=665941 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 3_3_56FAA.;"
DNA segregation ATPase FtsK/SpoIIIE and related proteins
L3_128_361G1_scaffold_743_4
Coprobacillus sp. 3_3_56FAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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3003..3203
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. 3_3_56FAA RepID=G9R7H0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM87625.1}; TaxID=665941 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 3_3_56FAA.;"
excisionase
L3_128_361G1_scaffold_743_5
Coprobacillus sp. 3_3_56FAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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3282..4460
DNA (1179bp) protein (393aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. 3_3_56FAA RepID=G9R7H1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM87626.1}; TaxID=665941 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 3_3_56FAA.;"
Integrase/recombinase (XerD/RipX family)
L3_128_361G1_scaffold_743_6
Coprobacillus sp. 29_1, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(5086..8784)
DNA (3699bp) protein (1233aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=469596 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 29_1.;"
DNA-directed RNA polymerase subunit beta' n=1 Tax=Coprobacillus sp. 29_1 RepID=E7GDQ2_9FIRM
DNA-directed RNA polymerase subunit beta'
L3_128_361G1_scaffold_743_7
Erysipelatoclostridium ramosum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(8797..12495)
DNA (3699bp) protein (1233aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=445974 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Erysipelatoclostridium ramosum DSM 1402.;"
DNA-directed RNA polymerase subunit beta n=1 Tax=Clostridium ramosum DSM 1402 RepID=B0N975_9FIRM
rpoB; DNA-directed RNA polymerase subunit beta
L3_128_361G1_scaffold_743_8
Catenibacterium sp. CAG:290, Catenibacterium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(13022..13624)
DNA (603bp) protein (201aa)
Methyltransferase small domain protein n=1 Tax=Catenibacterium sp. CAG:290 RepID=R7GS83_9FIRM
Methyltransferase small domain protein {ECO:0000313|EMBL:CDE28792.1}; TaxID=1262767 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Catenibacterium; environmental samples.;" source="Catenibacterium sp. CAG:290.;"
hypothetical protein
L3_128_361G1_scaffold_743_9
Coprobacillus sp. 29_1, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(13686..14057)
DNA (372bp) protein (124aa)
50S ribosomal protein L7/L12 n=1 Tax=Coprobacillus sp. 29_1 RepID=E7GDQ5_9FIRM
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=469596 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 29_1.;"
LSU ribosomal protein L12P
L3_128_361G1_scaffold_743_10
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(14091..14618)
DNA (528bp) protein (176aa)
50S ribosomal protein L10 n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5Q5X6_9FIRM
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
rplJ; 50S ribosomal protein L10
L3_128_361G1_scaffold_743_11
Coprobacillus sp. 29_1, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(14794..15477)
DNA (684bp) protein (228aa)
50S ribosomal protein L1 n=1 Tax=Coprobacillus sp. 29_1 RepID=E7GDQ7_9FIRM
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=469596 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 29_1.;"
rplA; 50S ribosomal protein L1
L3_128_361G1_scaffold_743_12
[Clostridium] spiroforme, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(15558..15974)
DNA (417bp) protein (139aa)
50S ribosomal protein L11 n=1 Tax=Clostridium spiroforme DSM 1552 RepID=B1C4R5_9FIRM
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736, ECO:0000256|SAAS:SAAS00021680}; TaxID=428126 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] spiroforme DSM 1552.;"
rplK; 50S ribosomal protein L11
L3_128_361G1_scaffold_743_13
Coprobacillus sp. 8_2_54BFAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(16243..16800)
DNA (558bp) protein (186aa)
Transcription termination/antitermination protein NusG n=1 Tax=Coprobacillus sp. 8_2_54BFAA RepID=H1ARL7_9FIRM
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=469597 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 8_2_54BFAA.;"
transcription antitermination protein NusG
L3_128_361G1_scaffold_743_14
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(16802..16990)
DNA (189bp) protein (63aa)
Protein translocase subunit SecE n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5Q747_9FIRM
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
L3_128_361G1_scaffold_743_15
[Clostridium] spiroforme, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(17001..17150)
DNA (150bp) protein (50aa)
50S ribosomal protein L33 n=1 Tax=Clostridium spiroforme DSM 1552 RepID=B1C360_9FIRM
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=428126 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] spiroforme DSM 1552.;"
rpmG; 50S ribosomal protein L33
L3_128_361G1_scaffold_743_16
Eggerthia catenaformis, Eggerthia, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(17201..17818)
DNA (618bp) protein (206aa)
Sigma-70 family RNA polymerase sigma factor n=1 Tax=Eggerthia catenaformis OT 569 = DSM 20559 RepID=M2NE19_9FIRM
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:EMD16448.1}; TaxID=999415 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Eggerthia.;" source="Eggerthia catenaformis OT 569 = DSM 20559.;"
L3_128_361G1_scaffold_743_17
[Clostridium] spiroforme, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(17835..18557)
DNA (723bp) protein (241aa)
RNA methyltransferase, TrmH family, group 3 n=1 Tax=Clostridium spiroforme DSM 1552 RepID=B1C358_9FIRM
RNA methyltransferase, TrmH family, group 3 {ECO:0000313|EMBL:EDS74616.1}; TaxID=428126 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] spiroforme DSM 1552.;"
TrmH family RNA methyltransferase
L3_128_361G1_scaffold_743_18
Coprobacillus sp. 29_1, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(18567..18989)
DNA (423bp) protein (141aa)
Mini-ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_01468}; Short=Mini-3 {ECO:0000256|HAMAP-Rule:MF_01468};; Short=Mini-RNase 3 {ECO:0000256|HAMAP-Rule:MF_01468};; EC=3.1.26.- {ECO:0000256|HAMAP-Rule:MF_01468};; Mini-RNase III {ECO:0000256|HAMAP-Rule:MF_01468}; TaxID=469596 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 29_1.;"
Mini-ribonuclease 3 n=1 Tax=Coprobacillus sp. 29_1 RepID=E7GDR4_9FIRM
ribonuclease III family protein
L3_128_361G1_scaffold_743_19
[Clostridium] spiroforme, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(18989..20329)
DNA (1341bp) protein (447aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=428126 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] spiroforme DSM 1552.;"
Cysteine--tRNA ligase n=1 Tax=Clostridium spiroforme DSM 1552 RepID=B1C356_9FIRM
cysS; cysteinyl-tRNA synthetase
L3_128_361G1_scaffold_743_20
unknown

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comp(20405..20965)
DNA (561bp) protein (187aa)

This feature has no annotations

L3_128_361G1_scaffold_743_21
Coprobacillus sp. 8_2_54BFAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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21031..21516
DNA (486bp) protein (162aa)
Cell wall hydrolase CwlJ n=5 Tax=Erysipelotrichaceae RepID=B0N4J0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHQ44683.1}; TaxID=469597 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 8_2_54BFAA.;"
cell wall hydrolase
L3_128_361G1_scaffold_743_22
Erysipelatoclostridium ramosum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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21529..22014
DNA (486bp) protein (162aa)
Spore coat protein GerQ n=4 Tax=Erysipelotrichaceae RepID=B0N4I9_9FIRM
Spore coat protein GerQ {ECO:0000313|EMBL:EDS18591.1}; TaxID=445974 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Erysipelatoclostridium ramosum DSM 1402.;"
gerQ; spore coat protein gerQ
L3_128_361G1_scaffold_743_23
GWE2_Bacteroidetes_32_14_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(22047..23291)
DNA (1245bp) protein (415aa)
Diguanylate cyclase/phosphodiesterase id=1804775 bin=GWE2_Bacteroidetes_32_14 species=Flavobacterium frigoris genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_32_14 organism_group=Bacteroidetes organism_desc=Good +
hypothetical protein
Tax=GWE2_Bacteroidetes_32_14_curated
L3_128_361G1_scaffold_743_24
unknown

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comp(23291..23452)
DNA (162bp) protein (54aa)

This feature has no annotations

L3_128_361G1_scaffold_743_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23768..24283)
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Clostridium difficile E10 RepID=U3VGY5_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CCL00244.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
phage repressor
L3_128_361G1_scaffold_743_26
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24584..24700)
DNA (117bp) protein (39aa)
Uncharacterized protein n=17 Tax=Firmicutes RepID=B6FNH8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFV18937.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
Predicted methylated DNA-protein cysteine methyltransferase
Displaying 26 items

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