ggKbase home page

L3_129_000G1_scaffold_21

Search features with annotation key words

Displaying items 1-30 of 265 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_129_000G1_scaffold_21_1
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(138..1061)
DNA (924bp) protein (308aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T0F2_9FIRM
integrase-related protein
Tax=BJP_IG2102_Clostridiales_34_350
L3_129_000G1_scaffold_21_2
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(1051..1563)
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Clostridium innocuum 2959 RepID=N9VCL6_CLOIN
Uncharacterized protein {ECO:0000313|EMBL:ENY88119.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
hypothetical protein
L3_129_000G1_scaffold_21_3
unknown

Not on your lists

1707..1901
DNA (195bp) protein (65aa)

This feature has no annotations

L3_129_000G1_scaffold_21_4
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1903..4467
DNA (2565bp) protein (855aa)
type I restriction system adenine methylase (hsdM) (EC:2.1.1.72)
Type I restriction system adenine methylase (HsdM) n=1 Tax=Ruminococcus obeum A2-162 RepID=D4LW55_9FIRM
Tax=BJP_IG2102_Clostridiales_34_350
L3_129_000G1_scaffold_21_5
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4469..5728
DNA (1260bp) protein (420aa)
UPI0003D5FB3D related cluster n=1 Tax=unknown RepID=UPI0003D5FB3D
Type I restriction modification DNA specificity protein {ECO:0000313|EMBL:ETI87970.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
restriction modification system DNA specificity domain protein
L3_129_000G1_scaffold_21_6
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

5725..6378
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCU9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC89430.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L3_129_000G1_scaffold_21_7
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

6384..6800
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCU8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC89429.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L3_129_000G1_scaffold_21_8
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

6800..7273
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCU7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC89428.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
conserved hypothetical protein, ribA/ribD-fused
L3_129_000G1_scaffold_21_9
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7408..10560
DNA (3153bp) protein (1051aa)
type-1 restriction enzyme R protein (EC:3.1.21.3)
HsdR family type I site-specific deoxyribonuclease n=1 Tax=Clostridium innocuum 2959 RepID=N9WWZ1_CLOIN
Tax=BJP_IG2102_Clostridiales_34_350
L3_129_000G1_scaffold_21_10
Chlamydia trachomatis, Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

10657..11193
DNA (537bp) protein (179aa)
Restriction modification system DNA specificity domain-containing protein n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BSZ5_9GAMM
Uncharacterised protein {ECO:0000313|EMBL:CRH88371.1}; TaxID=813 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia trachomatis.;"
Restriction modification system DNA specificity domain protein
L3_129_000G1_scaffold_21_11
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11353..12015
DNA (663bp) protein (221aa)
Orotate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216328}; Short=OPRT {ECO:0000256|HAMAP-Rule:MF_01208};; Short=OPRTase {ECO:0000256|HAMAP-Rule:MF_01208};; EC=2.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216337};; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
Orotate phosphoribosyltransferase n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8W2H1_9CLOT
hypothetical protein
L3_129_000G1_scaffold_21_12
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12383..13720
DNA (1338bp) protein (446aa)
Na+/H+-dicarboxylate symporters n=3 Tax=Clostridiales RepID=D4MY58_9FIRM
Na+/H+-dicarboxylate symporters
Transporter, dicarboxylate/amino acid:cation Na+/H+ symporter family protein {ECO:0000313|EMBL:EKY20474.1}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
L3_129_000G1_scaffold_21_13
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13812..14258)
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8VY13_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOQ37339.1}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
hypothetical protein
L3_129_000G1_scaffold_21_14
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14262..14459)
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8VXP3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOQ37338.1}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
XRE family transcriptional regulator
L3_129_000G1_scaffold_21_15
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14900..16714
DNA (1815bp) protein (605aa)
GTP-binding protein TypA/BipA n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8W2G0_9CLOT
GTP-binding protein TypA/BipA {ECO:0000313|EMBL:EOQ37332.1}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
typA; GTP-binding protein TypA
L3_129_000G1_scaffold_21_16
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16784..17164
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8VYF6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOQ37331.1}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
endoribonuclease L-PSP
L3_129_000G1_scaffold_21_17
Coprobacillus sp. 29_1, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(17217..18050)
DNA (834bp) protein (278aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. 29_1 RepID=E7G5M7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFW06528.1}; TaxID=469596 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 29_1.;"
hypothetical protein
L3_129_000G1_scaffold_21_18
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18057..18599)
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8VX66_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOQ37330.1}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
L3_129_000G1_scaffold_21_19
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18775..19410
DNA (636bp) protein (212aa)
Uncharacterized protein n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8VY01_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOQ37329.1}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
N-acetyltransferase GCN5
L3_129_000G1_scaffold_21_20
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19391..20110
DNA (720bp) protein (240aa)
DNA repair protein RadC n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8VXN2_9CLOT
DNA repair protein RadC {ECO:0000313|EMBL:EOQ37328.1}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
radC; putative DNA repair protein radC
L3_129_000G1_scaffold_21_21
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20137..22095
DNA (1959bp) protein (653aa)
UvrABC system protein B n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8W2F5_9CLOT
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
uvrB; UvrABC system protein B
L3_129_000G1_scaffold_21_22
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22132..22944
DNA (813bp) protein (271aa)
Uncharacterized protein n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8VX60_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOQ37325.1}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
fesA; 4Fe-4S ferredoxin
L3_129_000G1_scaffold_21_23
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22973..25816
DNA (2844bp) protein (948aa)
UvrABC system protein A n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8VXZ5_9CLOT
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
uvrA; UvrABC system protein A
L3_129_000G1_scaffold_21_24
unknown

Not on your lists

25977..26150
DNA (174bp) protein (58aa)

This feature has no annotations

L3_129_000G1_scaffold_21_25
unknown

Not on your lists

26212..26760
DNA (549bp) protein (183aa)

This feature has no annotations

L3_129_000G1_scaffold_21_26
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27000..29078
DNA (2079bp) protein (693aa)
exonuclease RecJ (EC:3.1.-.-)
Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8VXM7_9CLOT
Single-stranded-DNA-specific exonuclease RecJ {ECO:0000313|EMBL:EOQ37323.1}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
L3_129_000G1_scaffold_21_27
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29124..31337
DNA (2214bp) protein (738aa)
relA; GTP pyrophosphokinase (EC:2.7.6.5)
RelA/SpoT family protein n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8W2E9_9CLOT
RelA/SpoT family protein {ECO:0000313|EMBL:EOQ37322.1}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
L3_129_000G1_scaffold_21_28
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31353..31805
DNA (453bp) protein (151aa)
D-aminoacyl-tRNA deacylase {ECO:0000256|HAMAP-Rule:MF_00518, ECO:0000256|SAAS:SAAS00160974}; EC=3.1.1.96 {ECO:0000256|HAMAP-Rule:MF_00518, ECO:0000256|SAAS:SAAS00160970};; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
D-tyrosyl-tRNA(Tyr) deacylase n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8VYE8_9CLOT
dtd; D-tyrosyl-tRNA(Tyr) deacylase
L3_129_000G1_scaffold_21_29
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31827..32474
DNA (648bp) protein (216aa)
Hydroxyacylglutathione hydrolase (EC:3.1.2.6)
Uncharacterized protein n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8VX53_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOQ37320.1}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
L3_129_000G1_scaffold_21_30
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32471..33946
DNA (1476bp) protein (492aa)
hemZ; coproporphyrinogen III oxidase (EC:1.3.99.22)
Coproporphyrinogen dehydrogenase HemZ n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8VXY9_9CLOT
Coproporphyrinogen dehydrogenase HemZ {ECO:0000313|EMBL:EOQ37319.1}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
Displaying items 1-30 of 265 in total

View Taxonomy