ggKbase home page

L3_129_000G1_scaffold_43

Search features with annotation key words

Displaying items 1-30 of 338 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_129_000G1_scaffold_43_1
Bifidobacterium pseudolongum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(61..2181)
DNA (2121bp) protein (707aa)
Glycogen operon protein GlgX homolog {ECO:0000256|SAAS:SAAS00046872}; EC=3.2.1.- {ECO:0000256|SAAS:SAAS00055489};; TaxID=31954 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudolongum subsp. pseudolongum.;"
glycogen debranching protein n=1 Tax=Bifidobacterium pseudolongum RepID=UPI0003B49920
glycogen debranching protein
L3_129_000G1_scaffold_43_2
Bifidobacterium pseudolongum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2316..2933)
DNA (618bp) protein (206aa)
NTP pyrophosphohydrolase {ECO:0000313|EMBL:KFI77422.1}; EC=3.6.1.13 {ECO:0000313|EMBL:KFI77422.1};; TaxID=1690 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudolongum subsp. globosum.;"
NTP pyrophosphohydrolase n=1 Tax=Bifidobacterium pseudolongum RepID=UPI0003B61C10
NTP pyrophosphohydrolase
L3_129_000G1_scaffold_43_3
Bifidobacterium pseudolongum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2923..3843)
DNA (921bp) protein (307aa)
Putative GTP cyclohydrolase 1 type 2 {ECO:0000256|RuleBase:RU004385}; EC=3.5.4.16 {ECO:0000256|RuleBase:RU004385};; GTP cyclohydrolase I {ECO:0000256|RuleBase:RU004385}; TaxID=1447715 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudolongum PV8-2.;"
PadR family transcriptional regulator n=1 Tax=Bifidobacterium pseudolongum RepID=UPI0003B79F5F
PadR family transcriptional regulator
L3_129_000G1_scaffold_43_4
Bifidobacterium pseudolongum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3874..6705)
DNA (2832bp) protein (944aa)
DNA polymerase I n=1 Tax=Bifidobacterium pseudolongum RepID=UPI0003B35B4A
DNA polymerase I
DNA polymerase I {ECO:0000313|EMBL:AIZ16411.1}; TaxID=1447715 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudolongum PV8-2.;"
L3_129_000G1_scaffold_43_5
Bifidobacterium pseudolongum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6729..7514)
DNA (786bp) protein (262aa)
chemotaxis protein CheY n=1 Tax=Bifidobacterium pseudolongum RepID=UPI0003B485AA
chemotaxis protein CheY
Chemotaxis protein CheY {ECO:0000313|EMBL:AIZ16412.1}; TaxID=1447715 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudolongum PV8-2.;"
L3_129_000G1_scaffold_43_6
Bifidobacterium pseudolongum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7775..8383)
DNA (609bp) protein (203aa)
ADP-ribose pyrophosphatase n=1 Tax=Bifidobacterium pseudolongum RepID=UPI0003B3C1DA
ADP-ribose pyrophosphatase
ADP-ribose pyrophosphatase {ECO:0000313|EMBL:AIZ16413.1}; TaxID=1447715 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudolongum PV8-2.;"
L3_129_000G1_scaffold_43_7
Bifidobacterium pseudolongum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8486..8710)
DNA (225bp) protein (75aa)
Cro/Cl family transcriptional regulator n=1 Tax=Bifidobacterium pseudolongum RepID=UPI0003B41A9E
Cro/Cl family transcriptional regulator
Cro/Cl family transcriptional regulator {ECO:0000313|EMBL:AIZ16414.1}; TaxID=1447715 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudolongum PV8-2.;"
L3_129_000G1_scaffold_43_8
Bifidobacterium pseudolongum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9074..10516)
DNA (1443bp) protein (481aa)
pyruvate kinase (EC:2.7.1.40)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=1447715 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudolongum PV8-2.;"
pyruvate kinase n=1 Tax=Bifidobacterium pseudolongum RepID=UPI0003B55FF6
L3_129_000G1_scaffold_43_9
Bifidobacterium pseudolongum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10678..11631)
DNA (954bp) protein (318aa)
tellurium resistance protein TerC n=1 Tax=Bifidobacterium pseudolongum RepID=UPI0003B77200
tellurium resistance protein TerC
Tellurium resistance protein TerC {ECO:0000313|EMBL:AIZ16416.1}; TaxID=1447715 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudolongum PV8-2.;"
L3_129_000G1_scaffold_43_10
Bifidobacterium pseudolongum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11713..13824)
DNA (2112bp) protein (704aa)
excinuclease ABC subunit B n=1 Tax=Bifidobacterium pseudolongum RepID=UPI0003B67CA0
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=1690 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudolongum subsp. globosum.;"
excinuclease ABC subunit B
L3_129_000G1_scaffold_43_11
Bifidobacterium pseudolongum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13833..14474)
DNA (642bp) protein (214aa)
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=1447715 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudolongum PV8-2.;"
dephospho-CoA kinase n=1 Tax=Bifidobacterium pseudolongum RepID=UPI0003B6EAB2
dephospho-CoA kinase
L3_129_000G1_scaffold_43_12
Bifidobacterium pseudolongum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(14582..16063)
DNA (1482bp) protein (494aa)
30S ribosomal protein S1 {ECO:0000313|EMBL:KFI79860.1}; EC=1.17.1.2 {ECO:0000313|EMBL:KFI79860.1};; TaxID=31954 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudolongum subsp. pseudolongum.;"
30S ribosomal protein S1 n=1 Tax=Bifidobacterium pseudolongum RepID=UPI0003B333A5
30S ribosomal protein S1
L3_129_000G1_scaffold_43_13
Bifidobacterium pseudolongum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16206..17090)
DNA (885bp) protein (295aa)
bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase n=1 Tax=Bifidobacterium pseudolongum RepID=UPI0003B7826F
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=1690 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudolongum subsp. globosum.;"
methenyltetrahydrofolate cyclohydrolase
L3_129_000G1_scaffold_43_14
Bifidobacterium pseudolongum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17216..18244
DNA (1029bp) protein (343aa)
ABC transporter substrate-binding protein n=1 Tax=Bifidobacterium pseudolongum RepID=UPI0003B761A6
ABC transporter substrate-binding protein
ABC transporter substrate-binding protein {ECO:0000313|EMBL:AIZ16421.1}; TaxID=1447715 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudolongum PV8-2.;"
L3_129_000G1_scaffold_43_15
Bifidobacterium pseudolongum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18285..19166
DNA (882bp) protein (294aa)
ABC transporter ATP-binding protein n=1 Tax=Bifidobacterium pseudolongum RepID=UPI0003B69799
ABC transporter ATP-binding protein
ABC transporter ATP-binding protein {ECO:0000313|EMBL:AIZ16422.1}; TaxID=1447715 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudolongum PV8-2.;"
L3_129_000G1_scaffold_43_16
Bifidobacterium pseudolongum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19189..20025
DNA (837bp) protein (279aa)
zinc ABC transporter permease n=1 Tax=Bifidobacterium pseudolongum RepID=UPI0003B639F1
Mn2+/Zn2+ ABC transporter permease {ECO:0000313|EMBL:KFI77436.1}; TaxID=1690 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudolongum subsp. globosum.;"
zinc ABC transporter permease
L3_129_000G1_scaffold_43_17
Bifidobacterium pseudolongum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20041..20526)
DNA (486bp) protein (162aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395}; Short=MECDP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPS {ECO:0000256|HAMAP-Rule:MF_00107};; EC=4.6.1.12 {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395};; TaxID=1690 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudolongum subsp. globosum.;"
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Bifidobacterium pseudolongum RepID=UPI0003B7797D
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
L3_129_000G1_scaffold_43_18
Bifidobacterium pseudolongum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20523..21119)
DNA (597bp) protein (199aa)
CarD family transcriptional regulator n=1 Tax=Bifidobacterium pseudolongum RepID=UPI0003B3614B
CarD family transcriptional regulator
CarD family transcriptional regulator {ECO:0000313|EMBL:AIZ16425.1}; TaxID=1447715 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudolongum PV8-2.;"
L3_129_000G1_scaffold_43_19
Bifidobacterium pseudolongum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21256..23508
DNA (2253bp) protein (751aa)
1,4-alpha-glucan branching enzyme GlgB {ECO:0000256|HAMAP-Rule:MF_00685}; EC=2.4.1.18 {ECO:0000256|HAMAP-Rule:MF_00685};; 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase {ECO:0000256|HAMAP-Rule:MF_00685}; Alpha-(1->4)-glucan branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; Glycogen branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; TaxID=1447715 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudolongum PV8-2.;"
1,4-alpha-glucan branching protein n=1 Tax=Bifidobacterium pseudolongum RepID=UPI0003B5D119
1,4-alpha-glucan branching protein
L3_129_000G1_scaffold_43_20
Bifidobacterium pseudolongum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23527..24240
DNA (714bp) protein (238aa)
Chemotaxis protein CheY {ECO:0000313|EMBL:KFI77440.1}; EC=4.6.1.1 {ECO:0000313|EMBL:KFI77440.1};; TaxID=1690 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudolongum subsp. globosum.;"
chemotaxis protein CheY n=1 Tax=Bifidobacterium pseudolongum RepID=UPI0003B2FA23
chemotaxis protein CheY
L3_129_000G1_scaffold_43_21
Bifidobacterium pseudolongum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24240..25319
DNA (1080bp) protein (360aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1447715 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudolongum PV8-2.;"
membrane protein n=1 Tax=Bifidobacterium pseudolongum RepID=UPI0003B5470B
membrane protein
L3_129_000G1_scaffold_43_22
Bifidobacterium pseudolongum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25314..26039)
DNA (726bp) protein (242aa)
phosphoribosyl transferase n=1 Tax=Bifidobacterium pseudolongum RepID=UPI0003B467F7
Phosphoribosyl transferase {ECO:0000313|EMBL:KFI77442.1}; TaxID=1690 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudolongum subsp. globosum.;"
phosphoribosyl transferase
L3_129_000G1_scaffold_43_23
Bifidobacterium pseudolongum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26036..26860)
DNA (825bp) protein (275aa)
HAD family hydrolase n=1 Tax=Bifidobacterium pseudolongum RepID=UPI0003B35D1E
HAD family hydrolase
HAD family hydrolase {ECO:0000313|EMBL:AIZ16430.1}; TaxID=1447715 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudolongum PV8-2.;"
L3_129_000G1_scaffold_43_24
Bifidobacterium pseudolongum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27011..27373
DNA (363bp) protein (121aa)
hypothetical protein n=1 Tax=Bifidobacterium pseudolongum RepID=UPI0003B72C2D
peptidase
Peptidase {ECO:0000313|EMBL:AIZ16431.1}; TaxID=1447715 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudolongum PV8-2.;"
L3_129_000G1_scaffold_43_25
Bifidobacterium pseudolongum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27382..28926)
DNA (1545bp) protein (515aa)
organic solvents resistance ABC transporter permease n=1 Tax=Bifidobacterium pseudolongum RepID=UPI0003B3E9D7
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIZ16432.1}; TaxID=1447715 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudolongum PV8-2.;"
L3_129_000G1_scaffold_43_26
Bifidobacterium pseudolongum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28923..31934)
DNA (3012bp) protein (1004aa)
glycosyl transferase family 2 n=1 Tax=Bifidobacterium pseudolongum RepID=UPI0003B3C2B0
membrane protein
Membrane protein {ECO:0000313|EMBL:AIZ16433.1}; TaxID=1447715 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudolongum PV8-2.;"
L3_129_000G1_scaffold_43_27
Bifidobacterium pseudolongum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32120..33583
DNA (1464bp) protein (488aa)
hypothetical protein n=1 Tax=Bifidobacterium pseudolongum RepID=UPI0003B731E2
Transcriptional regulator {ECO:0000313|EMBL:KFI77447.1}; TaxID=1690 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudolongum subsp. globosum.;"
transcriptional regulator
L3_129_000G1_scaffold_43_28
Bifidobacterium pseudolongum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

33646..34920
DNA (1275bp) protein (425aa)
Transcriptional regulator, LytR family n=4 Tax=Bifidobacterium animalis subsp. lactis RepID=G0H605_BIFAN
Transcriptional regulator {ECO:0000313|EMBL:KFI77448.1}; TaxID=1690 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudolongum subsp. globosum.;"
transcriptional regulator
L3_129_000G1_scaffold_43_29
Bifidobacterium pseudolongum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

35063..35995
DNA (933bp) protein (311aa)
signal peptide protein n=1 Tax=Bifidobacterium pseudolongum RepID=UPI0003B49326
cell division protein FtsK
Cell division protein FtsK {ECO:0000313|EMBL:AIZ16436.1}; TaxID=1447715 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudolongum PV8-2.;"
L3_129_000G1_scaffold_43_30
Bifidobacterium pseudolongum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

35992..36705
DNA (714bp) protein (238aa)
signal peptide protein n=1 Tax=Bifidobacterium pseudolongum RepID=UPI0003B49326
cell division protein FtsK
Cell division protein FtsK {ECO:0000313|EMBL:AIZ16436.1}; TaxID=1447715 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudolongum PV8-2.;"
Displaying items 1-30 of 338 in total

View Taxonomy