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L3_129_000G1_scaffold_139

Search features with annotation key words

Displaying items 1-30 of 192 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_129_000G1_scaffold_139_1
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..1320)
DNA (1320bp) protein (440aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme CAG:511 RepID=R7PIA4_9CLOT
DNA-binding protein {ECO:0000313|EMBL:KJF41477.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
parB-like partition protein
L3_129_000G1_scaffold_139_2
Carnobacterium sp. 17-4, Carnobacterium, Lactobacillales, Bacilli, Firmicutes, Bacteria

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1552..2097
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Carnobacterium sp. (strain 17-4) RepID=F4BQS1_CARS1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB29796.1}; TaxID=208596 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Carnobacteriaceae; Carnobacterium.;" source="Carnobacterium sp. (strain 17-4).;"
L3_129_000G1_scaffold_139_3
Carnobacterium sp. 17-4, Carnobacterium, Lactobacillales, Bacilli, Firmicutes, Bacteria

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2109..2690
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Carnobacterium sp. (strain 17-4) RepID=F4BQS3_CARS1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB29798.1}; TaxID=208596 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Carnobacteriaceae; Carnobacterium.;" source="Carnobacterium sp. (strain 17-4).;"
L3_129_000G1_scaffold_139_4
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3136..3519
DNA (384bp) protein (128aa)
DNA-binding helix-turn-helix protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2BKZ7_9CLOT
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:ERI72498.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
L3_129_000G1_scaffold_139_5
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3521..3850
DNA (330bp) protein (110aa)
Sporulation initiation factor Spo0A n=3 Tax=Clostridiales RepID=G9YX21_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO35531.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
stage 0 sporulation protein A
L3_129_000G1_scaffold_139_6
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3892..4320
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YX22_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF55760.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
hypothetical protein
L3_129_000G1_scaffold_139_7
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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4446..4973
DNA (528bp) protein (176aa)
Sigma-70 region 2 n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YX23_9FIRM
Sigma-70 region 2 {ECO:0000313|EMBL:EHM37995.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
ECF subfamily RNA polymerase sigma-24 factor
L3_129_000G1_scaffold_139_8
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4970..6364
DNA (1395bp) protein (465aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1C7G9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO35534.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
L3_129_000G1_scaffold_139_9
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6525..7223
DNA (699bp) protein (233aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1C7H0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO35535.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L3_129_000G1_scaffold_139_10
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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7198..9180
DNA (1983bp) protein (661aa)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YX26_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF55764.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
integral membrane sensor signal transduction histidine kinase
L3_129_000G1_scaffold_139_11
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9451..10857
DNA (1407bp) protein (469aa)
MATE efflux family protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2BJU8_9CLOT
MATE efflux family protein {ECO:0000313|EMBL:ERI72505.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
putative efflux protein, MATE family
L3_129_000G1_scaffold_139_12
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11111..11875)
DNA (765bp) protein (255aa)
4Fe-4S binding domain protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2CYZ0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KGF55766.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
4Fe-4S ferredoxin
L3_129_000G1_scaffold_139_13
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11981..12139)
DNA (159bp) protein (53aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1C7H4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO35539.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
hypothetical protein
L3_129_000G1_scaffold_139_14
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12263..14137)
DNA (1875bp) protein (625aa)
ABC transporter, ATP-binding protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2CYK8_9CLOT
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ERI72366.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
ABC-type multidrug transport system, ATPase and permease components
L3_129_000G1_scaffold_139_15
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14130..15869)
DNA (1740bp) protein (580aa)
ABC transporter, ATP-binding protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2CSY7_9CLOT
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ERI72367.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
ABC-type multidrug transport system, ATPase and permease components
L3_129_000G1_scaffold_139_16
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15901..16395)
DNA (495bp) protein (165aa)
Transcriptional regulator, MarR family n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YX32_9FIRM
Transcriptional regulator, MarR family {ECO:0000313|EMBL:EHM38004.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
transcriptional regulatory protein
L3_129_000G1_scaffold_139_17
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16515..17660)
DNA (1146bp) protein (382aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1C7H8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO35543.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
putative surface layer protein
L3_129_000G1_scaffold_139_18
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17657..18289)
DNA (633bp) protein (211aa)
Redox-sensing transcriptional repressor Rex n=3 Tax=Clostridiales RepID=G9YX34_9FIRM
Redox-sensing transcriptional repressor Rex {ECO:0000256|HAMAP-Rule:MF_01131}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
rex; redox-sensing transcriptional repressor Rex
L3_129_000G1_scaffold_139_19
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18458..18847
DNA (390bp) protein (130aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=G9YX35_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO35545.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
spore cortex-lytic enzyme pre-pro-form
L3_129_000G1_scaffold_139_20
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18860..20080
DNA (1221bp) protein (407aa)
Peptidoglycan binding domain protein n=3 Tax=Clostridiales RepID=G9YX36_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO35546.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
iron transporter FeoB
L3_129_000G1_scaffold_139_21
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20077..20637
DNA (561bp) protein (187aa)
Peptidoglycan binding domain protein n=3 Tax=Clostridiales RepID=G9YX37_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO35547.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
Putative peptidoglycan-binding domain-containing protein
L3_129_000G1_scaffold_139_22
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20712..21224)
DNA (513bp) protein (171aa)
Ferritin {ECO:0000256|RuleBase:RU361145}; EC=1.16.3.2 {ECO:0000256|RuleBase:RU361145};; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
Putative ferritin-1 n=3 Tax=Clostridiales RepID=G9YX38_9FIRM
Ferritin-like protein
L3_129_000G1_scaffold_139_23
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21537..25697)
DNA (4161bp) protein (1387aa)
DNA polymerase III PolC-type {ECO:0000256|HAMAP-Rule:MF_00356}; Short=PolIII {ECO:0000256|HAMAP-Rule:MF_00356};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_00356};; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
polC; PolC-type DNA polymerase I (EC:2.7.7.7)
DNA polymerase III polC-type n=2 Tax=Clostridiales RepID=G9YX40_9FIRM
L3_129_000G1_scaffold_139_24
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25723..26760)
DNA (1038bp) protein (346aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184189}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184173};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
ispG; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC:1.17.4.3)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=2 Tax=Clostridiales RepID=G9YX41_9FIRM
L3_129_000G1_scaffold_139_25
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26774..27850)
DNA (1077bp) protein (359aa)
putative M50B family peptidase (EC:3.4.24.-)
RIP metalloprotease RseP n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YX42_9FIRM
RIP metalloprotease RseP {ECO:0000313|EMBL:EHM38014.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
L3_129_000G1_scaffold_139_26
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27866..29029)
DNA (1164bp) protein (388aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007105};; 1-deoxyxylulose-5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183}; 2-C-methyl-D-erythritol 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00183}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2BKN2_9CLOT
L3_129_000G1_scaffold_139_27
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29031..29858)
DNA (828bp) protein (276aa)
Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938}; EC=2.7.7.41 {ECO:0000256|RuleBase:RU003938};; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
Phosphatidate cytidylyltransferase n=2 Tax=Clostridiales RepID=H1C7I8_9FIRM
cdsA; phosphatidate cytidylyltransferase
L3_129_000G1_scaffold_139_28
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29859..30605)
DNA (747bp) protein (249aa)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
uppS; undecaprenyl pyrophosphate synthetase (EC:2.5.1.31)
Isoprenyl transferase n=3 Tax=Clostridiales RepID=G9YX45_9FIRM
L3_129_000G1_scaffold_139_29
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30688..31242)
DNA (555bp) protein (185aa)
Ribosome-recycling factor n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2CYM1_9CLOT
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
frr; ribosome recycling factor
L3_129_000G1_scaffold_139_30
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31244..31966)
DNA (723bp) protein (241aa)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197270};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
pyrH; uridylate kinase (EC:2.7.4.22)
Uridylate kinase n=2 Tax=Clostridiales RepID=H1C7J1_9FIRM
Displaying items 1-30 of 192 in total

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