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L3_129_000G1_scaffold_177

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Displaying items 1-30 of 127 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_129_000G1_scaffold_177_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(141..914)
DNA (774bp) protein (258aa)
RNA polymerase sigma-B factor n=203 Tax=Clostridium difficile RepID=C9XIC3_CLODC
RNA polymerase sigma-B factor
RNA polymerase sigma-B factor (Sigma-37) {ECO:0000313|EMBL:CCK97744.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
L3_129_000G1_scaffold_177_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(914..1321)
DNA (408bp) protein (136aa)
Serine-protein kinase rsbW {ECO:0000313|EMBL:EQE58618.1}; EC=2.7.11.1 {ECO:0000313|EMBL:EQE58618.1};; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
Anti-sigma-B factor (Serine-protein kinase) n=178 Tax=Clostridium difficile RepID=C9XIC2_CLODC
anti-sigma-B factor (serine-protein kinase)
L3_129_000G1_scaffold_177_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1325..1642)
DNA (318bp) protein (106aa)
Anti-sigma factor antagonist n=11 Tax=Clostridium difficile RepID=T2XC16_CLODI
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
anti-sigma-B factor antagonist
L3_129_000G1_scaffold_177_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1654..1914)
DNA (261bp) protein (87aa)
Uncharacterized protein n=216 Tax=Clostridium difficile RepID=Q18C95_CLOD6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQG73158.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_129_000G1_scaffold_177_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1914..2210)
DNA (297bp) protein (99aa)
Uncharacterized protein n=214 Tax=Clostridium difficile RepID=Q18C91_CLOD6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL28908.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_129_000G1_scaffold_177_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(2279..4705)
DNA (2427bp) protein (809aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
gyrA; DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A n=156 Tax=Clostridium difficile RepID=Q18C90_CLOD6
L3_129_000G1_scaffold_177_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4725..6626)
DNA (1902bp) protein (634aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
DNA gyrase subunit B n=15 Tax=Clostridium difficile RepID=G6B9P1_CLODI
gyrB; DNA gyrase subunit B
L3_129_000G1_scaffold_177_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6627..7742)
DNA (1116bp) protein (372aa)
DNA replication and repair protein RecF n=178 Tax=Clostridium difficile RepID=RECF_CLOD6
DNA replication and repair protein
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_129_000G1_scaffold_177_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7760..7966)
DNA (207bp) protein (69aa)
S4 domain protein n=211 Tax=Clostridium difficile RepID=T3IKA0_CLODC
RNA-binding mediating protein
Putative RNA-binding mediating protein {ECO:0000313|EMBL:CCK94035.1}; TaxID=1225722 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E1.;"
L3_129_000G1_scaffold_177_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8103..9311)
DNA (1209bp) protein (403aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
DNA polymerase III subunit beta n=2 Tax=Clostridium difficile RepID=C9XIB4_CLODC
dnaN; DNA polymerase III subunit beta
L3_129_000G1_scaffold_177_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9451..10770)
DNA (1320bp) protein (440aa)
Chromosomal replication initiator protein DnaA n=217 Tax=Clostridium difficile RepID=C9XIB3_CLODC
dnaA; chromosomal replication initiator protein
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377, ECO:0000256|SAAS:SAAS00009621}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_129_000G1_scaffold_177_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11644..11988
DNA (345bp) protein (115aa)
rnpA; ribonuclease P (EC:3.1.26.5)
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
Ribonuclease P protein component n=1 Tax=Clostridium difficile CD22 RepID=T2V579_CLODI
L3_129_000G1_scaffold_177_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12014..12271
DNA (258bp) protein (86aa)
Putative membrane protein insertion efficiency factor n=38 Tax=Clostridium difficile RepID=G6B9N4_CLODI
Putative membrane protein insertion efficiency factor {ECO:0000256|HAMAP-Rule:MF_00386, ECO:0000256|SAAS:SAAS00100919}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
hypothetical protein
L3_129_000G1_scaffold_177_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12303..13010
DNA (708bp) protein (236aa)
Membrane insertase, YidC/Oxa1 family domain protein n=210 Tax=Clostridium difficile RepID=C9XSY0_CLODC
sporulation membrane protein
Sporulation membrane protein SpoIIIJ {ECO:0000313|EMBL:CCL31918.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_129_000G1_scaffold_177_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12979..13608
DNA (630bp) protein (210aa)
R3H domain protein n=21 Tax=Clostridium difficile RepID=G6B9N2_CLODI
R3H domain protein {ECO:0000313|EMBL:EHJ28965.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
SpoIIIJ-associated RNA/ssDNA-binding protein Jag
L3_129_000G1_scaffold_177_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13720..15099
DNA (1380bp) protein (460aa)
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379};; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
tRNA modification GTPase MnmE n=17 Tax=Clostridium difficile RepID=T2UK64_CLODI
trmE; tRNA modification GTPase TrmE
L3_129_000G1_scaffold_177_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15194..17089
DNA (1896bp) protein (632aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=5 Tax=Clostridium difficile RepID=D5Q9P1_CLODI
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000256|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000256|HAMAP-Rule:MF_00129}; TaxID=525258 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile NAP07.;"
gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
L3_129_000G1_scaffold_177_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17082..17801
DNA (720bp) protein (240aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00277524};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Ribosomal RNA small subunit methyltransferase G n=1 Tax=Clostridium difficile CD22 RepID=T2V423_CLODI
gidB; 16S rRNA methyltransferase GidB
L3_129_000G1_scaffold_177_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17964..18749
DNA (786bp) protein (262aa)
ParB/RepB/Spo0J family partition domain protein n=211 Tax=Clostridium difficile RepID=C9XSX5_CLODC
stage 0 sporulation protein
Putative nucleoid occlusion protein {ECO:0000313|EMBL:EHJ28961.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L3_129_000G1_scaffold_177_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18884..19657
DNA (774bp) protein (258aa)
Sporulation initiation inhibitor n=156 Tax=Clostridium difficile RepID=C9XSX4_CLODC
soj; sporulation initiation inhibitor
Transcriptional regulator, sporulation initiation inhibitor, chromosome partitioning protein {ECO:0000313|EMBL:CCL00156.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
L3_129_000G1_scaffold_177_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19659..20522
DNA (864bp) protein (288aa)
Stage 0 sporulation protein J n=211 Tax=Clostridium difficile RepID=C9XSX3_CLODC
spo0J; stage 0 sporulation protein J
Stage 0 sporulation protein J {ECO:0000313|EMBL:EQG73108.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_129_000G1_scaffold_177_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20555..21697
DNA (1143bp) protein (381aa)
putative cysteine desulfurase family protein (EC:2.8.1.7)
Putative cysteine desulfurase family protein {ECO:0000313|EMBL:CEK00391.1}; EC=2.8.1.7 {ECO:0000313|EMBL:CEK00391.1};; Selenocysteine lyase {ECO:0000313|EMBL:CKG66002.1}; EC=2.8.1.7 {ECO:0000313|EMBL:CKG66002.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Aminotransferase class-V family protein n=64 Tax=Clostridium difficile RepID=T3G1C6_CLODC
L3_129_000G1_scaffold_177_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21831..22406)
DNA (576bp) protein (192aa)
Uncharacterized protein n=7 Tax=Clostridium difficile RepID=G6B9L9_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ28835.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
hypothetical protein
L3_129_000G1_scaffold_177_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22642..23958
DNA (1317bp) protein (439aa)
Tetratricopeptide repeat protein n=8 Tax=Clostridium difficile RepID=D5Q9P8_CLODI
transcriptional regulator
Tetratricopeptide repeat protein {ECO:0000313|EMBL:EHJ28834.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
L3_129_000G1_scaffold_177_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24033..24665
DNA (633bp) protein (211aa)
Selenium metabolism protein YedF n=8 Tax=Clostridium difficile RepID=G6B9L7_CLODI
Selenium metabolism protein YedF {ECO:0000313|EMBL:EHJ28833.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
hypothetical protein
L3_129_000G1_scaffold_177_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24738..25001
DNA (264bp) protein (88aa)
Uncharacterized protein n=207 Tax=Clostridium difficile RepID=C9XSW8_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ70575.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_129_000G1_scaffold_177_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25016..25201
DNA (186bp) protein (62aa)
Uncharacterized protein n=176 Tax=Clostridium difficile RepID=C9XSW7_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ70574.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_129_000G1_scaffold_177_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25304..26500
DNA (1197bp) protein (399aa)
aminotransferase (EC:2.6.1.-)
Putative aminotransferase {ECO:0000313|EMBL:CCL24148.1}; EC=2.6.1.- {ECO:0000313|EMBL:CCL24148.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Multiple substrate aminotransferase n=196 Tax=Clostridium difficile RepID=T3FWL6_CLODC
L3_129_000G1_scaffold_177_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


26714..26992
DNA (279bp) protein (93aa)
30S ribosomal protein S6 n=207 Tax=Clostridium difficile RepID=RS6_CLOD6
30S ribosomal protein S6
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
L3_129_000G1_scaffold_177_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27029..27463
DNA (435bp) protein (145aa)
Single-stranded DNA-binding protein n=204 Tax=Clostridium difficile RepID=C9XSW4_CLODC
ssb; single-strand binding protein
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|PIRNR:PIRNR002070}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
Displaying items 1-30 of 127 in total

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