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L3_129_000G1_scaffold_589

Search features with annotation key words

Displaying items 1-30 of 97 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_129_000G1_scaffold_589_1
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(166..453)
DNA (288bp) protein (96aa)
Putative uncharacterized protein n=3 Tax=unclassified Lachnospiraceae RepID=E5XGT6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG82093.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
L3_129_000G1_scaffold_589_2
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(416..1054)
DNA (639bp) protein (213aa)
Putative uncharacterized protein n=3 Tax=unclassified Lachnospiraceae RepID=F7JDB5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFV19432.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
Hedgehog/intein hint domain-containing protein
L3_129_000G1_scaffold_589_3
unknown

Not on your lists

1279..1695
DNA (417bp) protein (139aa)

This feature has no annotations

L3_129_000G1_scaffold_589_4
Streptococcus constellatus, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(2174..2524)
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Streptococcus constellatus subsp. constellatus SK53 RepID=U2XJI6_STRCV
Uncharacterized protein {ECO:0000313|EMBL:GAD39356.1}; TaxID=1095730 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus anginosus group.;" source="Streptococcus constellatus subsp. constellatus SK53.;"
L3_129_000G1_scaffold_589_5
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2643..2933)
DNA (291bp) protein (97aa)
CRISPR-associated endoribonuclease Cas2 {ECO:0000256|HAMAP-Rule:MF_01471}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01471};; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
CRISPR-associated endoribonuclease Cas2 n=4 Tax=Clostridiales RepID=A7B807_RUMGN
hypothetical protein
L3_129_000G1_scaffold_589_6
Coprococcus sp. HPP0074, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2946..3977)
DNA (1032bp) protein (344aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=1078090 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0074.;"
CRISPR-associated endonuclease Cas1 n=1 Tax=Coprococcus sp. HPP0074 RepID=S2Y150_9FIRM
DNA polymerase
L3_129_000G1_scaffold_589_7
Coprococcus sp. HPP0074, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3974..4639)
DNA (666bp) protein (222aa)
CRISPR-associated protein cas4 n=1 Tax=Coprococcus sp. HPP0074 RepID=S2YW73_9FIRM
CRISPR-associated protein cas4 {ECO:0000313|EMBL:EPD56034.1}; TaxID=1078090 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0074.;"
CRISPR-associated exonuclease, Cas4 family
L3_129_000G1_scaffold_589_8
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4639..5550)
DNA (912bp) protein (304aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B810_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EEA82741.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L3_129_000G1_scaffold_589_9
Coprococcus sp. HPP0074, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5551..7305)
DNA (1755bp) protein (585aa)
CRISPR-associated protein cas8c/csd1, subtype I-c/dvulg n=1 Tax=Coprococcus sp. HPP0074 RepID=S2YF29_9FIRM
CRISPR-associated protein cas8c/csd1, subtype I-c/dvulg {ECO:0000313|EMBL:EPD56032.1}; TaxID=1078090 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0074.;"
CRISPR-associated protein, Csd1 family
L3_129_000G1_scaffold_589_10
Coprococcus sp. HPP0074, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7302..7964)
DNA (663bp) protein (221aa)
CRISPR-associated protein cas5, subtype I-c/dvulg n=1 Tax=Coprococcus sp. HPP0074 RepID=S2XVD7_9FIRM
CRISPR-associated protein cas5, subtype I-c/dvulg {ECO:0000313|EMBL:EPD56031.1}; TaxID=1078090 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0074.;"
CRISPR-associated protein, Csd5d family
L3_129_000G1_scaffold_589_11
unknown

Not on your lists

comp(7986..8156)
DNA (171bp) protein (57aa)

This feature has no annotations

L3_129_000G1_scaffold_589_12
Coprococcus sp. HPP0074, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8521..10665)
DNA (2145bp) protein (715aa)
CRISPR-associated helicase cas3 n=1 Tax=Coprococcus sp. HPP0074 RepID=S2YW65_9FIRM
CRISPR-associated helicase cas3 {ECO:0000313|EMBL:EPD56029.1}; TaxID=1078090 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0074.;"
CRISPR-associated helicase, Cas3 family
L3_129_000G1_scaffold_589_13
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10994..11914)
DNA (921bp) protein (307aa)
Homoserine O-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084556}; EC=2.3.1.46 {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084596};; Homoserine O-transsuccinylase {ECO:0000256|HAMAP-Rule:MF_00295}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
homoserine O-succinyltransferase (EC:2.3.1.46)
Homoserine O-succinyltransferase n=5 Tax=Clostridiales RepID=A5KKC3_9FIRM
L3_129_000G1_scaffold_589_14
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11919..13292)
DNA (1374bp) protein (458aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=A5KKC2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25347.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
Predicted permease
L3_129_000G1_scaffold_589_15
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13616..13936)
DNA (321bp) protein (107aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=A5KKC0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFV20500.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
Domain of Unknown Function (DUF1540).
L3_129_000G1_scaffold_589_16
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13987..14715)
DNA (729bp) protein (243aa)
Uncharacterized protein n=1 Tax=Ruminococcus torques CAG:61 RepID=R5QFI1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ27363.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
hypothetical protein
L3_129_000G1_scaffold_589_17
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14716..15231)
DNA (516bp) protein (172aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=A5KKB8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ27362.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
Predicted metal-binding protein related to the C-terminal domain of SecA
L3_129_000G1_scaffold_589_18
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15418..15633
DNA (216bp) protein (72aa)
Uncharacterized protein n=4 Tax=Lachnospiraceae RepID=A5KKB7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFV20497.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
hypothetical protein
L3_129_000G1_scaffold_589_19
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15638..15796)
DNA (159bp) protein (53aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=A5KKB6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ27360.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
L3_129_000G1_scaffold_589_20
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16005..17285)
DNA (1281bp) protein (427aa)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
adenylosuccinate synthase (EC:6.3.4.4)
Adenylosuccinate synthetase n=4 Tax=Lachnospiraceae RepID=A5KKB5_9FIRM
L3_129_000G1_scaffold_589_21
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17562..17804
DNA (243bp) protein (81aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=R5QFH7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ27358.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
L3_129_000G1_scaffold_589_22
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17915..19330)
DNA (1416bp) protein (472aa)
Transcriptional regulator, GntR family n=4 Tax=Lachnospiraceae RepID=A5KKB3_9FIRM
Transcriptional regulator, GntR family {ECO:0000313|EMBL:EDK25766.1}; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs
L3_129_000G1_scaffold_589_23
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19354..21021)
DNA (1668bp) protein (556aa)
Glutamine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00016670}; EC=6.1.1.18 {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00023088};; Glutaminyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00126}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
glutaminyl-tRNA synthetase (EC:6.1.1.18)
Glutamine--tRNA ligase n=3 Tax=unclassified Lachnospiraceae RepID=E5XDY7_9FIRM
L3_129_000G1_scaffold_589_24
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21239..22705
DNA (1467bp) protein (489aa)
Transporter n=4 Tax=Lachnospiraceae RepID=A5KKB1_9FIRM
Transporter {ECO:0000256|RuleBase:RU003732}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
hypothetical protein
L3_129_000G1_scaffold_589_25
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22811..23167)
DNA (357bp) protein (119aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=A5KKB0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ27354.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
hypothetical protein
L3_129_000G1_scaffold_589_26
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23651..24097)
DNA (447bp) protein (149aa)
D-aminoacyl-tRNA deacylase {ECO:0000256|HAMAP-Rule:MF_00518, ECO:0000256|SAAS:SAAS00160054}; EC=3.1.1.96 {ECO:0000256|HAMAP-Rule:MF_00518};; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
D-tyrosyl-tRNA(Tyr) deacylase (EC:3.1.-.-)
D-tyrosyl-tRNA(Tyr) deacylase n=5 Tax=Clostridiales RepID=A5KKA9_9FIRM
L3_129_000G1_scaffold_589_27
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24130..24756)
DNA (627bp) protein (209aa)
RNA polymerase sigma factor n=5 Tax=Clostridiales RepID=A5KKA8_9FIRM
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
RNA polymerase, sigma 30 subunit, SigH
L3_129_000G1_scaffold_589_28
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24791..25567)
DNA (777bp) protein (259aa)
rRNA methylase, putative, group 3 (EC:2.1.1.-)
RNA methyltransferase, TrmH family, group 3 n=5 Tax=Clostridiales RepID=A5KKA7_9FIRM
RNA methyltransferase {ECO:0000313|EMBL:EFV20487.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
L3_129_000G1_scaffold_589_29
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25548..26015)
DNA (468bp) protein (156aa)
Mini-ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_01468}; Short=Mini-3 {ECO:0000256|HAMAP-Rule:MF_01468};; Short=Mini-RNase 3 {ECO:0000256|HAMAP-Rule:MF_01468};; EC=3.1.26.- {ECO:0000256|HAMAP-Rule:MF_01468};; Mini-RNase III {ECO:0000256|HAMAP-Rule:MF_01468}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
Mini-ribonuclease 3 n=5 Tax=Clostridiales RepID=A5KKA6_9FIRM
hypothetical protein
L3_129_000G1_scaffold_589_30
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26000..27406)
DNA (1407bp) protein (469aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase n=4 Tax=Clostridiales RepID=A5KKA5_9FIRM
Displaying items 1-30 of 97 in total

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