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L3_129_000G1_scaffold_616

Search features with annotation key words

Displaying items 1-30 of 68 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_129_000G1_scaffold_616_1
unknown

Not on your lists

comp(419..562)
DNA (144bp) protein (48aa)

This feature has no annotations

L3_129_000G1_scaffold_616_2
Eubacterium plexicaudatum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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639..857
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Eubacterium plexicaudatum ASF492 RepID=N2BEM8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EMZ35299.1}; TaxID=1235802 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium plexicaudatum ASF492.;"
Predicted transcriptional regulator
L3_129_000G1_scaffold_616_3
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1713..2537
DNA (825bp) protein (275aa)
Uncharacterized protein n=1 Tax=Ruminococcus torques CAG:61 RepID=R5R0N3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ26507.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
L3_129_000G1_scaffold_616_4
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2779..3720)
DNA (942bp) protein (314aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=R5QD75_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ26508.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
BadF/BadG/BcrA/BcrD family ATPase
L3_129_000G1_scaffold_616_5
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3735..5048)
DNA (1314bp) protein (438aa)
Family 4 glycosyl hydrolase n=5 Tax=Clostridiales RepID=A5KQC2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ26509.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
glycoside hydrolase family protein
L3_129_000G1_scaffold_616_6
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5066..5881)
DNA (816bp) protein (272aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=R5QCX4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG86695.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
binding-protein-dependent transporters inner membrane component
L3_129_000G1_scaffold_616_7
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5894..6823)
DNA (930bp) protein (310aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5QWF4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ26511.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
binding-protein-dependent transporters inner membrane component
L3_129_000G1_scaffold_616_8
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6842..8158)
DNA (1317bp) protein (439aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=R5R0N6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ26512.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
putative ABC transporter substrate binding protein
L3_129_000G1_scaffold_616_9
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8177..9910)
DNA (1734bp) protein (578aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=R5QD78_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG86698.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
glycoside hydrolase
L3_129_000G1_scaffold_616_10
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10218..10943
DNA (726bp) protein (242aa)
UbiC transcription regulator-associated domain protein n=5 Tax=Clostridiales RepID=A5KQC8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ26514.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
GntR family transcriptional regulator
L3_129_000G1_scaffold_616_11
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11108..11683)
DNA (576bp) protein (192aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=R5QCY1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG86700.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
Transcriptional regulator
L3_129_000G1_scaffold_616_12
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11744..12499)
DNA (756bp) protein (252aa)
Phosphotransferase enzyme family n=5 Tax=Clostridiales RepID=A5KQD0_9FIRM
Aminoglycoside phosphotransferase {ECO:0000313|EMBL:EFV18922.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
Phosphotransferase enzyme family.
L3_129_000G1_scaffold_616_13
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12768..15386)
DNA (2619bp) protein (873aa)
acetaldehyde dehydrogenase/alcohol dehydrogenase AdhE (EC:1.2.1.10 1.1.1.1)
Alcohol dehydrogenase n=4 Tax=Clostridiales RepID=E5XIH8_9FIRM
Aldehyde-alcohol dehydrogenase {ECO:0000256|PIRNR:PIRNR000111}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
L3_129_000G1_scaffold_616_14
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(15666..16184)
DNA (519bp) protein (173aa)
50S ribosomal protein L17 n=5 Tax=Clostridiales RepID=A5KQD2_9FIRM
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
LSU ribosomal protein L17P
L3_129_000G1_scaffold_616_15
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16446..17408)
DNA (963bp) protein (321aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
DNA-directed RNA polymerase subunit alpha n=5 Tax=Clostridiales RepID=E5XIH6_9FIRM
DNA-directed RNA polymerase subunit alpha
L3_129_000G1_scaffold_616_16
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(17468..18061)
DNA (594bp) protein (198aa)
30S ribosomal protein S4 n=5 Tax=Clostridiales RepID=E5XIH5_9FIRM
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
SSU ribosomal protein S4P
L3_129_000G1_scaffold_616_17
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(18147..18542)
DNA (396bp) protein (132aa)
30S ribosomal protein S11 n=6 Tax=Clostridiales RepID=B5CSS6_9FIRM
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
SSU ribosomal protein S11P
L3_129_000G1_scaffold_616_18
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(18694..19062)
DNA (369bp) protein (123aa)
30S ribosomal protein S13 n=4 Tax=Lachnospiraceae RepID=A5KQD7_9FIRM
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
30S ribosomal protein S13
L3_129_000G1_scaffold_616_19
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19454..19567)
DNA (114bp) protein (38aa)
50S ribosomal protein L36 n=20 Tax=Firmicutes RepID=D9QZN6_CLOSW
50S ribosomal protein L36
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251, ECO:0000256|RuleBase:RU000571}; TaxID=610130 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533; / WM1).;"
L3_129_000G1_scaffold_616_20
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19854..20072)
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=5 Tax=Clostridiales RepID=A5KQD9_9FIRM
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
translation initiation factor IF-1
L3_129_000G1_scaffold_616_21
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20120..20914)
DNA (795bp) protein (265aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
Adenylate kinase (EC:2.7.4.3)
Adenylate kinase n=5 Tax=Clostridiales RepID=A5KQE0_9FIRM
L3_129_000G1_scaffold_616_22
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(20921..22273)
DNA (1353bp) protein (451aa)
Protein translocase subunit SecY n=5 Tax=Clostridiales RepID=A5KQE1_9FIRM
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
protein translocase subunit secY/sec61 alpha
L3_129_000G1_scaffold_616_23
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(22273..22713)
DNA (441bp) protein (147aa)
50S ribosomal protein L15 n=3 Tax=Clostridiales RepID=A5KQE2_9FIRM
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
LSU ribosomal protein L15P
L3_129_000G1_scaffold_616_24
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(22734..22916)
DNA (183bp) protein (61aa)
50S ribosomal protein L30 n=5 Tax=Clostridiales RepID=A5KQE3_9FIRM
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
LSU ribosomal protein L30P
L3_129_000G1_scaffold_616_25
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(22976..23485)
DNA (510bp) protein (170aa)
30S ribosomal protein S5 n=5 Tax=Clostridiales RepID=A5KQE4_9FIRM
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
SSU ribosomal protein S5P
L3_129_000G1_scaffold_616_26
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(23501..23869)
DNA (369bp) protein (123aa)
50S ribosomal protein L18 n=5 Tax=Clostridiales RepID=A5KQE5_9FIRM
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
LSU ribosomal protein L18P
L3_129_000G1_scaffold_616_27
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(23887..24429)
DNA (543bp) protein (181aa)
50S ribosomal protein L6 n=5 Tax=Clostridiales RepID=A5KQE6_9FIRM
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
LSU ribosomal protein L6P
L3_129_000G1_scaffold_616_28
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(24609..25010)
DNA (402bp) protein (134aa)
30S ribosomal protein S8 n=5 Tax=Clostridiales RepID=A5KQE7_9FIRM
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
Ribosomal protein S8
L3_129_000G1_scaffold_616_29
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(25099..25284)
DNA (186bp) protein (62aa)
30S ribosomal protein S14 type Z n=5 Tax=Clostridiales RepID=A5KQF0_9FIRM
30S ribosomal protein S14 type Z {ECO:0000256|HAMAP-Rule:MF_01364}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
Ribosomal protein S14
L3_129_000G1_scaffold_616_30
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(25297..25836)
DNA (540bp) protein (180aa)
50S ribosomal protein L5 n=5 Tax=Clostridiales RepID=E5XIG1_9FIRM
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333, ECO:0000256|RuleBase:RU003931}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
rplE; 50S ribosomal protein L5
Displaying items 1-30 of 68 in total

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