ggKbase home page

L3_129_000G1_scaffold_2905

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_129_000G1_scaffold_2905_1
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1..1362
DNA (1362bp) protein (454aa)
DnaD domain protein n=5 Tax=Clostridiales RepID=A5KLZ7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFV18853.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
DnaD and phage-associated domain
L3_129_000G1_scaffold_2905_2
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1410..2408
DNA (999bp) protein (333aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=R5QWN2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFV18852.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
replicative DNA helicase loader DnaI
L3_129_000G1_scaffold_2905_3
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2408..3592
DNA (1185bp) protein (395aa)
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate diphosphokinase n=5 Tax=root RepID=A5KLZ9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25386.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
L3_129_000G1_scaffold_2905_4
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3638..4741
DNA (1104bp) protein (368aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (EC:2.7.13.3)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=3 Tax=Lachnospiraceae RepID=A5KM00_9FIRM
L3_129_000G1_scaffold_2905_5
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4734..5441
DNA (708bp) protein (236aa)
Response regulator receiver domain protein n=3 Tax=Clostridiales RepID=A5KM01_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25384.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
winged helix family two component transcriptional regulator
L3_129_000G1_scaffold_2905_6
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5596..5739
DNA (144bp) protein (48aa)
Uncharacterized protein n=4 Tax=Lachnospiraceae RepID=A5KM02_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG87072.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
hypothetical protein
L3_129_000G1_scaffold_2905_7
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5915..9661)
DNA (3747bp) protein (1249aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=1 Tax=Ruminococcus torques CAG:61 RepID=R5Q9W8_9FIRM
L3_129_000G1_scaffold_2905_8
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9679..13542)
DNA (3864bp) protein (1288aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=1 Tax=Ruminococcus torques ATCC 27756 RepID=A5KM05_9FIRM
L3_129_000G1_scaffold_2905_9
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(14021..14395)
DNA (375bp) protein (125aa)
50S ribosomal protein L7/L12 n=5 Tax=Clostridiales RepID=A5KM08_9FIRM
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
LSU ribosomal protein L12P
L3_129_000G1_scaffold_2905_10
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(14504..15034)
DNA (531bp) protein (177aa)
50S ribosomal protein L10 n=4 Tax=Clostridiales RepID=E5XIP2_9FIRM
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
hypothetical protein
L3_129_000G1_scaffold_2905_11
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15652..16371
DNA (720bp) protein (240aa)
Transposase n=16 Tax=Clostridiales RepID=E5XKG9_9FIRM
Transposase {ECO:0000313|EMBL:EFV18192.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
integrase catalytic subunit
L3_129_000G1_scaffold_2905_12
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16978..18177
DNA (1200bp) protein (400aa)
Uncharacterized protein n=1 Tax=Ruminococcus torques CAG:61 RepID=R5QWR7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ26651.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
Aspartate/tyrosine/aromatic aminotransferase
L3_129_000G1_scaffold_2905_13
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18174..18710
DNA (537bp) protein (179aa)
deoxyuridine 5'-triphosphate nucleotidohydrolase (EC:3.6.1.23)
Uncharacterized protein n=1 Tax=Ruminococcus torques CAG:61 RepID=R5QD76_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ26650.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
L3_129_000G1_scaffold_2905_14
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18894..19568
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=Ruminococcus torques CAG:61 RepID=R5QJZ1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ26649.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
hypothetical protein
L3_129_000G1_scaffold_2905_15
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19570..21066
DNA (1497bp) protein (499aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=R5QDK1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ26648.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
Bacillus/Clostridium GerA spore germination protein.
L3_129_000G1_scaffold_2905_16
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21235..22098
DNA (864bp) protein (288aa)
EDD domain protein, DegV family n=5 Tax=Clostridiales RepID=A5KKD3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG79651.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
EDD domain protein, DegV family
Displaying 16 items

View Taxonomy