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L3_129_000G1_scaffold_1124

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_129_000G1_scaffold_1124_1
unknown

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1..84
DNA (84bp) protein (28aa)

This feature has no annotations

L3_129_000G1_scaffold_1124_2
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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106..1473
DNA (1368bp) protein (456aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=A5KJ04_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ26888.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
L3_129_000G1_scaffold_1124_3
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1589..1936
DNA (348bp) protein (116aa)
50S ribosomal protein L19 n=5 Tax=Clostridiales RepID=A5KJ05_9FIRM
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
ribosomal protein L19, bacterial type
L3_129_000G1_scaffold_1124_4
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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2116..2790
DNA (675bp) protein (225aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
signal peptidase I, bacterial type (EC:3.4.21.89)
Uncharacterized protein n=1 Tax=Ruminococcus torques CAG:61 RepID=R5QDW4_9FIRM
L3_129_000G1_scaffold_1124_5
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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2808..3650
DNA (843bp) protein (281aa)
Ribosome biogenesis GTPase A n=4 Tax=Lachnospiraceae RepID=A5KJ09_9FIRM
Ribosome biogenesis GTPase A {ECO:0000256|PIRNR:PIRNR006230}; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
ribosome biogenesis GTP-binding protein YlqF
L3_129_000G1_scaffold_1124_6
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3799..4335
DNA (537bp) protein (179aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
signal peptidase I, bacterial type (EC:3.4.21.89)
Signal peptidase I n=5 Tax=Clostridiales RepID=A5KJ10_9FIRM
L3_129_000G1_scaffold_1124_7
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4328..5095
DNA (768bp) protein (256aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
Ribonuclease HII (EC:3.1.26.4)
Ribonuclease HII n=4 Tax=Lachnospiraceae RepID=A5KJ11_9FIRM
L3_129_000G1_scaffold_1124_8
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5153..5515
DNA (363bp) protein (121aa)
UPF0102 protein RUMTOR_00208 n=5 Tax=Clostridiales RepID=A5KJ12_9FIRM
UPF0102 protein BN734_00770 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
conserved hypothetical protein TIGR00252
L3_129_000G1_scaffold_1124_9
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5499..6368
DNA (870bp) protein (290aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=A5KJ13_9FIRM
Laccase domain protein {ECO:0000256|RuleBase:RU361274}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
conserved hypothetical protein TIGR00726
L3_129_000G1_scaffold_1124_10
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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6461..7480
DNA (1020bp) protein (340aa)
Transporter, small conductance mechanosensitive ion channel MscS family protein n=5 Tax=Clostridiales RepID=A5KJ15_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ26896.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
Small-conductance mechanosensitive channel
L3_129_000G1_scaffold_1124_11
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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7867..9264
DNA (1398bp) protein (466aa)
M18 family aminopeptidase {ECO:0000256|RuleBase:RU004387}; EC=3.4.11.- {ECO:0000256|RuleBase:RU004387};; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
Aspartyl aminopeptidase (EC:3.4.11.-)
M18 family aminopeptidase n=3 Tax=Clostridiales RepID=A5KJ16_9FIRM
L3_129_000G1_scaffold_1124_12
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9455..9850
DNA (396bp) protein (132aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=R5QE81_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ26898.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
Rrf2 family protein
L3_129_000G1_scaffold_1124_13
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9999..11903
DNA (1905bp) protein (635aa)
cooS_2; carbon-monoxide dehydrogenase, catalytic subunit (EC:1.2.99.2)
Carbon-monoxide dehydrogenase, catalytic subunit n=5 Tax=Clostridiales RepID=A5KJ18_9FIRM
Carbon-monoxide dehydrogenase {ECO:0000313|EMBL:CCZ26899.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
L3_129_000G1_scaffold_1124_14
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11916..12362
DNA (447bp) protein (149aa)
4Fe-4S binding domain protein n=5 Tax=Clostridiales RepID=A5KJ19_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ26900.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
anaerobic dimethylsulfoxide reductase subunit B
L3_129_000G1_scaffold_1124_15
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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12366..13631
DNA (1266bp) protein (422aa)
noxA; nitrate reductase, NADH oxidase subunit NoxA (EC:1.7.1.4)
Pyridine nucleotide-disulfide oxidoreductase n=5 Tax=Clostridiales RepID=A5KJ20_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ26901.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
L3_129_000G1_scaffold_1124_16
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13714..16338
DNA (2625bp) protein (875aa)
pyruvate, phosphate dikinase (EC:2.7.9.1)
Pyruvate, phosphate dikinase n=5 Tax=Clostridiales RepID=A5KJ22_9FIRM
Pyruvate {ECO:0000313|EMBL:CCZ26902.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
L3_129_000G1_scaffold_1124_17
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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16641..16982
DNA (342bp) protein (114aa)
Conserved domain protein n=5 Tax=Clostridiales RepID=A5KJ23_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ26903.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
putative cell surface protein
L3_129_000G1_scaffold_1124_18
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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17157..17441
DNA (285bp) protein (95aa)
Uncharacterized protein n=4 Tax=Lachnospiraceae RepID=A5KJ24_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDK25327.1}; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
Bacterial protein of unknown function (DUF961).
L3_129_000G1_scaffold_1124_19
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17446..17931)
DNA (486bp) protein (162aa)
Uncharacterized protein n=4 Tax=Lachnospiraceae RepID=A5KJ25_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG88751.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
transposase IS4 family protein
L3_129_000G1_scaffold_1124_20
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18193..18804
DNA (612bp) protein (204aa)
Methyltransferase domain protein n=3 Tax=Clostridiales RepID=A5KJ27_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25679.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
Methylase involved in ubiquinone/menaquinone biosynthesis
L3_129_000G1_scaffold_1124_21
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18876..19052
DNA (177bp) protein (59aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=R5QAF2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25680.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
transcriptional regulatory protein
L3_129_000G1_scaffold_1124_22
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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19122..19340
DNA (219bp) protein (73aa)
DNA-binding helix-turn-helix protein n=5 Tax=Clostridiales RepID=A5KJ29_9FIRM
XRE family Transcriptional regulator {ECO:0000313|EMBL:EFV18311.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
hypothetical protein
L3_129_000G1_scaffold_1124_23
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19461..19757)
DNA (297bp) protein (99aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=A5KJ30_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25682.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
L3_129_000G1_scaffold_1124_24
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19905..20264)
DNA (360bp) protein (120aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=A5KJ31_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25683.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
hypothetical protein
L3_129_000G1_scaffold_1124_25
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20282..20713)
DNA (432bp) protein (144aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=R5QH93_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG88745.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
L3_129_000G1_scaffold_1124_26
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20710..20916)
DNA (207bp) protein (69aa)
DNA-binding helix-turn-helix protein n=5 Tax=Clostridiales RepID=A5KJ33_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25685.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
Transcriptional regulator, Cro/CI family
L3_129_000G1_scaffold_1124_27
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21117..21971
DNA (855bp) protein (285aa)
Transcriptional regulator, AraC family n=5 Tax=Clostridiales RepID=A5KJ34_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25686.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
transcriptional regulator, AraC family
L3_129_000G1_scaffold_1124_28
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22025..22663
DNA (639bp) protein (213aa)
Chloramphenicol acetyltransferase n=5 Tax=Clostridiales RepID=E5XK44_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25687.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
chloramphenicol acetyltransferase
L3_129_000G1_scaffold_1124_29
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22921..24657
DNA (1737bp) protein (579aa)
ABC transporter, ATP-binding protein n=4 Tax=Clostridiales RepID=A5KJ37_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25688.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
ABC transporter
L3_129_000G1_scaffold_1124_30
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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24681..26312
DNA (1632bp) protein (544aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_1_57FAA RepID=F7JF10_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG88740.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
ABC transporter-like protein
Displaying items 1-30 of 43 in total

View Taxonomy