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L3_129_000G1_scaffold_1254

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_129_000G1_scaffold_1254_1
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(143..322)
DNA (180bp) protein (60aa)
50S ribosomal protein L32 n=5 Tax=Clostridiales RepID=A5KQ77_9FIRM
50S ribosomal protein L32 {ECO:0000256|HAMAP-Rule:MF_00340}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
ribosomal protein L32
L3_129_000G1_scaffold_1254_2
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(326..853)
DNA (528bp) protein (176aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=R5QVS8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ26306.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
Predicted metal-binding, possibly nucleic acid-binding protein
L3_129_000G1_scaffold_1254_3
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(982..2178)
DNA (1197bp) protein (399aa)
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
acetate kinase (EC:2.7.2.1)
Acetate kinase n=5 Tax=Clostridiales RepID=A5KQ79_9FIRM
L3_129_000G1_scaffold_1254_4
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2253..3248)
DNA (996bp) protein (332aa)
phosphate acetyltransferase (EC:2.3.1.8)
Phosphate acetyltransferase n=5 Tax=Clostridiales RepID=A5KQ80_9FIRM
Phosphate acetyltransferase {ECO:0000313|EMBL:CCZ26308.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
L3_129_000G1_scaffold_1254_5
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3466..4923)
DNA (1458bp) protein (486aa)
Magnesium transporter n=5 Tax=Clostridiales RepID=A5KQ81_9FIRM
Magnesium transporter MgtE {ECO:0000256|RuleBase:RU362011}; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
magnesium transporter
L3_129_000G1_scaffold_1254_6
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4984..6279
DNA (1296bp) protein (432aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=A5KQ82_9FIRM
UPF0348 protein BN734_00284 {ECO:0000256|HAMAP-Rule:MF_01539}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
Predicted nucleotidyltransferase
L3_129_000G1_scaffold_1254_7
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6361..7557)
DNA (1197bp) protein (399aa)
Isocitrate dehydrogenase [NADP] {ECO:0000256|PIRNR:PIRNR000108}; EC=1.1.1.42 {ECO:0000256|PIRNR:PIRNR000108};; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
isocitrate dehydrogenase, NADP-dependent, eukaryotic type (EC:1.1.1.42)
Isocitrate dehydrogenase [NADP] n=5 Tax=Clostridiales RepID=A5KQ84_9FIRM
L3_129_000G1_scaffold_1254_8
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7656..8312)
DNA (657bp) protein (219aa)
FCD domain protein n=5 Tax=Clostridiales RepID=A5KQ85_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ26312.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
transcriptional regulator, GntR family
L3_129_000G1_scaffold_1254_9
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8334..9722)
DNA (1389bp) protein (463aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5QCI9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ26313.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
Isopropylmalate/homocitrate/citramalate synthases
L3_129_000G1_scaffold_1254_10
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10031..11194)
DNA (1164bp) protein (388aa)
Phosphoglycerate dehydrogenase and related dehydrogenases (EC:1.1.1.95)
4-phosphoerythronate dehydrogenase n=4 Tax=Clostridiales RepID=A5KQ87_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG84310.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
L3_129_000G1_scaffold_1254_11
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11197..12279)
DNA (1083bp) protein (361aa)
Phosphoserine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; EC=2.6.1.52 {ECO:0000256|HAMAP-Rule:MF_00160};; Phosphohydroxythreonine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
phosphoserine aminotransferase (EC:2.6.1.52)
Phosphoserine aminotransferase n=5 Tax=Clostridiales RepID=A5KQ88_9FIRM
L3_129_000G1_scaffold_1254_12
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12348..14033)
DNA (1686bp) protein (562aa)
Acetolactate synthase {ECO:0000256|RuleBase:RU003591}; EC=2.2.1.6 {ECO:0000256|RuleBase:RU003591};; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
acetolactate synthase, large subunit, biosynthetic type (EC:2.2.1.6)
Acetolactate synthase n=5 Tax=Clostridiales RepID=A5KQ89_9FIRM
L3_129_000G1_scaffold_1254_13
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14091..15764)
DNA (1674bp) protein (558aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase n=5 Tax=Clostridiales RepID=A5KQ91_9FIRM
L3_129_000G1_scaffold_1254_14
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15789..16871)
DNA (1083bp) protein (361aa)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase n=5 Tax=Clostridiales RepID=A5KQ92_9FIRM
L3_129_000G1_scaffold_1254_15
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17081..17359)
DNA (279bp) protein (93aa)
Preprotein translocase, YajC subunit n=5 Tax=Clostridiales RepID=A5KQ93_9FIRM
Preprotein translocase subunit {ECO:0000313|EMBL:EGG84305.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
preprotein translocase, YajC subunit
L3_129_000G1_scaffold_1254_16
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17490..18614)
DNA (1125bp) protein (375aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
tRNA-guanine transglycosylase (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase n=5 Tax=Clostridiales RepID=A5KQ94_9FIRM
L3_129_000G1_scaffold_1254_17
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18670..20322)
DNA (1653bp) protein (551aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=R5QVU3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ26321.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
peptidoglycan transpeptidase precursor, ErfK-YbiS-YhnG family
L3_129_000G1_scaffold_1254_18
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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20524..21630
DNA (1107bp) protein (369aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
chorismate synthase (EC:4.2.3.5)
Chorismate synthase n=5 Tax=Clostridiales RepID=A5KQ97_9FIRM
L3_129_000G1_scaffold_1254_19
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21640..22713
DNA (1074bp) protein (358aa)
Spermidine/putrescine import ATP-binding protein PotA {ECO:0000256|HAMAP-Rule:MF_01726}; EC=3.6.3.31 {ECO:0000256|HAMAP-Rule:MF_01726};; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
spermidine/putrescine ABC transporter ATP-binding subunit (EC:3.6.3.31)
Polyamine ABC transporter, ATP-binding protein n=5 Tax=Clostridiales RepID=A5KQ98_9FIRM
L3_129_000G1_scaffold_1254_20
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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22703..23518
DNA (816bp) protein (272aa)
Spermidine/putrescine ABC transporter n=4 Tax=Clostridiales RepID=E5XEX0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ26324.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
binding-protein-dependent transport system inner membrane protein
L3_129_000G1_scaffold_1254_21
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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23515..25401
DNA (1887bp) protein (629aa)
Spermidine/putrescine ABC transporter n=5 Tax=Clostridiales RepID=E5XEX1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ26325.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
Spermidine/putrescine-binding periplasmic protein
L3_129_000G1_scaffold_1254_22
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25410..27080)
DNA (1671bp) protein (557aa)
Uridine kinase (EC:2.7.1.48)
Phosphoribulokinase/uridine kinase family protein n=4 Tax=Lachnospiraceae RepID=A5KQA1_9FIRM
Phosphoribulokinase {ECO:0000313|EMBL:EFV20147.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
L3_129_000G1_scaffold_1254_23
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(27122..27904)
DNA (783bp) protein (261aa)
Putative GTP cyclohydrolase 1 type 2 {ECO:0000256|RuleBase:RU004385}; EC=3.5.4.16 {ECO:0000256|RuleBase:RU004385};; GTP cyclohydrolase I {ECO:0000256|RuleBase:RU004385}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
Putative GTP cyclohydrolase 1 type 2 n=5 Tax=Clostridiales RepID=A5KQA2_9FIRM
conserved hypothetical protein TIGR00486
L3_129_000G1_scaffold_1254_24
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27894..28616)
DNA (723bp) protein (241aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=A5KQA3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ26369.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
Predicted SAM-dependent methyltransferase
L3_129_000G1_scaffold_1254_25
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(28656..29807)
DNA (1152bp) protein (384aa)
RNA polymerase sigma factor SigA n=5 Tax=Clostridiales RepID=A5KQA4_9FIRM
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
RNA polymerase, sigma 70 subunit, RpoD
L3_129_000G1_scaffold_1254_26
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(29825..31600)
DNA (1776bp) protein (592aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
DNA primase (EC:2.7.7.-)
DNA primase n=4 Tax=Clostridiales RepID=A5KQA5_9FIRM
L3_129_000G1_scaffold_1254_27
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31669..32670)
DNA (1002bp) protein (334aa)
dGTPase n=5 Tax=Clostridiales RepID=E5XEX7_9FIRM
Deoxyguanosinetriphosphate triphosphohydrolase-like protein {ECO:0000256|HAMAP-Rule:MF_01212}; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
deoxyguanosinetriphosphate triphosphohydrolase-like protein
L3_129_000G1_scaffold_1254_28
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32675..34210)
DNA (1536bp) protein (512aa)
Polyphosphate:AMP phosphotransferase n=6 Tax=root RepID=A5KQA7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG84291.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
hypothetical protein
L3_129_000G1_scaffold_1254_29
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34431..34787)
DNA (357bp) protein (119aa)
Transcriptional regulator n=5 Tax=Clostridiales RepID=E5XEX9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ26375.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
DNA-binding protein
L3_129_000G1_scaffold_1254_30
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34962..35183
DNA (222bp) protein (74aa)
DNA-binding helix-turn-helix protein n=5 Tax=Clostridiales RepID=A5KQA9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ26376.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
transcriptional regulator
Displaying 30 items

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