ggKbase home page

L3_129_000G1_scaffold_1311

Search features with annotation key words

Displaying items 1-30 of 60 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_129_000G1_scaffold_1311_1
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(269..1351)
-----------------
DNA (1083bp)
protein (361aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 5_1_63FAA RepID=E5VLQ2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFV16239.1}; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
transcriptional regulator, LacI family
L3_129_000G1_scaffold_1311_2
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1709..2365
-----------------
DNA (657bp)
protein (219aa)
transaldolase, putative, TalC family (EC:2.2.1.2)
Probable transaldolase {ECO:0000256|HAMAP-Rule:MF_00494}; EC=2.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00494};; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
Probable transaldolase n=4 Tax=Clostridiales RepID=D4MV85_9FIRM
L3_129_000G1_scaffold_1311_3
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2384..3205
-----------------
DNA (822bp)
protein (274aa)
Transketolase, N-terminal subunit (EC:2.2.1.1)
Transketolase n=4 Tax=Clostridiales RepID=E5VLQ0_9FIRM
Transketolase, thiamine diphosphate binding domain protein {ECO:0000313|EMBL:EDS20642.1}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
L3_129_000G1_scaffold_1311_4
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3207..4145
-----------------
DNA (939bp)
protein (313aa)
Transketolase, C-terminal subunit (EC:2.2.1.1)
Transketolase, C-terminal subunit n=5 Tax=Clostridiales RepID=D4MV86_9FIRM
Transketolase, pyridine binding domain protein {ECO:0000313|EMBL:EKY21897.1}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
L3_129_000G1_scaffold_1311_5
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4273..5109
-----------------
DNA (837bp)
protein (279aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 5_1_63FAA RepID=E5VLP8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFV16235.1}; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
Predicted integral membrane protein
L3_129_000G1_scaffold_1311_6
unknown

Not on your lists

5207..6559
-----------------
DNA (1353bp)
protein (451aa)
phosphoglucosamine mutase (EC:5.4.2.10)
Phosphoglucosamine mutase {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327}; EC=5.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327};; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
Phosphoglucosamine mutase n=5 Tax=Clostridiales RepID=D4MV88_9FIRM
L3_129_000G1_scaffold_1311_7
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6563..8788
-----------------
DNA (2226bp)
protein (742aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
replication restart DNA helicase PriA (EC:3.6.1.-)
Primosomal protein N n=2 Tax=Lachnospiraceae RepID=E5VLP6_9FIRM
L3_129_000G1_scaffold_1311_8
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8807..9286
-----------------
DNA (480bp)
protein (160aa)
peptide deformylase (EC:3.5.1.88)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
Peptide deformylase n=5 Tax=Clostridiales RepID=D4MV90_9FIRM
L3_129_000G1_scaffold_1311_9
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9288..10217
-----------------
DNA (930bp)
protein (310aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043680}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase n=2 Tax=Lachnospiraceae RepID=E5VLP4_9FIRM
L3_129_000G1_scaffold_1311_10
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10222..11565
-----------------
DNA (1344bp)
protein (448aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00276898};; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
ribosomal RNA small subunit methyltransferase RsmB (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase B n=1 Tax=Anaerostipes hadrus DSM 3319 RepID=L1Q1X7_9FIRM
L3_129_000G1_scaffold_1311_11
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11585..12601
-----------------
DNA (1017bp)
protein (339aa)
23S rRNA m(2)A-2503 methyltransferase (EC:2.1.1.-)
Probable dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
Probable dual-specificity RNA methyltransferase RlmN n=1 Tax=Firmicutes bacterium CAG:270 RepID=R7C0E3_9FIRM
L3_129_000G1_scaffold_1311_12
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12613..13332
-----------------
DNA (720bp)
protein (240aa)
Serine/threonine protein phosphatase (EC:3.1.3.16)
Serine/threonine protein phosphatase n=4 Tax=Clostridiales RepID=D4MV94_9FIRM
Protein phosphatase 2C {ECO:0000313|EMBL:CDA32726.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
L3_129_000G1_scaffold_1311_13
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13345..14985
-----------------
DNA (1641bp)
protein (547aa)
Serine/threonine protein kinase (EC:2.7.11.1)
Kinase domain protein n=1 Tax=Anaerostipes hadrus DSM 3319 RepID=L1Q1Q2_9FIRM
Kinase domain protein {ECO:0000313|EMBL:EKY21888.1}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
L3_129_000G1_scaffold_1311_14
unknown

Not on your lists

15177..16052
-----------------
DNA (876bp)
protein (292aa)
ribosome small subunit-dependent GTPase A (EC:3.6.1.-)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820, ECO:0000313|EMBL:CBL39312.1};; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
Putative ribosome biogenesis GTPase RsgA n=4 Tax=Clostridiales RepID=D4MV96_9FIRM
L3_129_000G1_scaffold_1311_15
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16052..16687
-----------------
DNA (636bp)
protein (212aa)
thiamine diphosphokinase (EC:2.7.6.2)
Thiamine pyrophosphokinase n=2 Tax=Lachnospiraceae RepID=E5VLN8_9FIRM
Thiamine pyrophosphokinase {ECO:0000313|EMBL:EFV16225.1}; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
L3_129_000G1_scaffold_1311_16
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16699..17190
-----------------
DNA (492bp)
protein (164aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=B0P427_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA32730.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
L3_129_000G1_scaffold_1311_17
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17194..17700
-----------------
DNA (507bp)
protein (169aa)
Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily n=5 Tax=Clostridiales RepID=D4MV99_9FIRM
Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily
Carbonic anhydrase {ECO:0000313|EMBL:EFV16223.1}; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
L3_129_000G1_scaffold_1311_18
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17728..18705
-----------------
DNA (978bp)
protein (326aa)
Transcriptional regulator, LacI family n=5 Tax=Clostridiales RepID=D4MVA0_9FIRM
transcriptional regulator, LacI family
LacI family Bacterial regulatory protein {ECO:0000313|EMBL:CDA32732.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
L3_129_000G1_scaffold_1311_19
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18924..20315
-----------------
DNA (1392bp)
protein (464aa)
Glycosyl hydrolase family 32 n=3 Tax=Lachnospiraceae RepID=E5VLN4_9FIRM
Glycosyl hydrolase family 32 {ECO:0000313|EMBL:EKY21882.1}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
Beta-fructosidases (levanase/invertase)
L3_129_000G1_scaffold_1311_20
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20345..22261
-----------------
DNA (1917bp)
protein (639aa)
PTS system, glucose-like IIB component {ECO:0000313|EMBL:EDS20660.1}; EC=2.7.1.69 {ECO:0000313|EMBL:EDS20660.1};; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
PTS system, glucose subfamily, IIA component n=3 Tax=Clostridiales RepID=D4MVA2_9FIRM
PTS system, glucose subfamily, IIA component
L3_129_000G1_scaffold_1311_21
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22263..23648
-----------------
DNA (1386bp)
protein (462aa)
sucrose-6-phosphate hydrolase (EC:3.2.1.26)
Sucrose-6-phosphate hydrolase n=2 Tax=Lachnospiraceae RepID=R5Z163_9FIRM
Sucrose-6-phosphate hydrolase {ECO:0000313|EMBL:CDA32735.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
L3_129_000G1_scaffold_1311_22
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23785..24189
-----------------
DNA (405bp)
protein (135aa)
Uncharacterized protein n=1 Tax=Anaerostipes hadrus DSM 3319 RepID=L1Q1L2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EKY21879.1}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
hypothetical protein
L3_129_000G1_scaffold_1311_23
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24315..24608
-----------------
DNA (294bp)
protein (98aa)
glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit (EC:6.3.5.6 6.3.5.7)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C {ECO:0000256|HAMAP-Rule:MF_00122}; Short=Asp/Glu-ADT subunit C {ECO:0000256|HAMAP-Rule:MF_00122};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00122};; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=5 Tax=Clostridiales RepID=D4MVA5_9FIRM
L3_129_000G1_scaffold_1311_24
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24619..26091
-----------------
DNA (1473bp)
protein (491aa)
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A (EC:6.3.5.- 6.3.5.6 6.3.5.7)
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000256|HAMAP-Rule:MF_00120}; Short=Glu-ADT subunit A {ECO:0000256|HAMAP-Rule:MF_00120};; EC=6.3.5.7 {ECO:0000256|HAMAP-Rule:MF_00120};; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
Glutamyl-tRNA(Gln) amidotransferase subunit A n=2 Tax=Clostridiales RepID=D4MVA6_9FIRM
L3_129_000G1_scaffold_1311_25
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26092..27531
-----------------
DNA (1440bp)
protein (480aa)
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (EC:6.3.5.6 6.3.5.7 6.3.5.-)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000256|HAMAP-Rule:MF_00121, ECO:0000256|SAAS:SAAS00222465}; Short=Asp/Glu-ADT subunit B {ECO:0000256|HAMAP-Rule:MF_00121};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00121};; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Anaerostipes hadrus DSM 3319 RepID=L1Q1W4_9FIRM
L3_129_000G1_scaffold_1311_26
unknown

Not on your lists

27734..28249
-----------------
DNA (516bp)
protein (172aa)
RNA polymerase sigma factor, sigma-70 family n=2 Tax=Clostridiales RepID=D4MVA8_9FIRM
RNA polymerase sigma factor, sigma-70 family
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:CBL39324.1}; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
L3_129_000G1_scaffold_1311_27
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28236..29573
-----------------
DNA (1338bp)
protein (446aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 5_1_63FAA RepID=E5VLR3_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFV16211.1}; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
L3_129_000G1_scaffold_1311_28
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29709..30533
-----------------
DNA (825bp)
protein (275aa)
Cof-like hydrolase n=2 Tax=Lachnospiraceae RepID=E5VLR2_9FIRM
Cof-like hydrolase {ECO:0000313|EMBL:EDS20668.1}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
HAD-superfamily hydrolase, subfamily IIB
L3_129_000G1_scaffold_1311_29
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30535..31230
-----------------
DNA (696bp)
protein (232aa)
HAD hydrolase, family IA, variant 1 n=1 Tax=Anaerostipes hadrus DSM 3319 RepID=L1Q1P0_9FIRM
HAD hydrolase, family IA, variant 1 {ECO:0000313|EMBL:EKY21873.1}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
L3_129_000G1_scaffold_1311_30
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31373..31573)
-----------------
DNA (201bp)
protein (67aa)
Cold-shock DNA-binding protein family n=5 Tax=Clostridiales RepID=D4MVB2_9FIRM
cold-shock DNA-binding protein family
Cold-shock DNA-binding domain protein {ECO:0000313|EMBL:EDS20670.1}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
Displaying items 1-30 of 60 in total

View Taxonomy