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L3_129_000G1_scaffold_94

Search features with annotation key words

Displaying items 1-30 of 146 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_129_000G1_scaffold_94_1
Clostridium sp. CAG:265, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..154
DNA (153bp) protein (51aa)
50S ribosomal protein L32 n=2 Tax=environmental samples RepID=R6FTR3_9CLOT
50S ribosomal protein L32 {ECO:0000256|HAMAP-Rule:MF_00340}; TaxID=1262787 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:265.;"
rpmF; 50S ribosomal protein L32
L3_129_000G1_scaffold_94_2
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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217..1203
DNA (987bp) protein (329aa)
Phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054336}; EC=2.3.1.n2 {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054327};; Acyl-ACP phosphotransacylase {ECO:0000256|HAMAP-Rule:MF_00019}; Acyl-[acyl-carrier-protein]--phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; Phosphate-acyl-ACP acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; TaxID=1262780 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:221.;"
Phosphate acyltransferase n=1 Tax=Clostridium sp. CAG:221 RepID=R6G4Z6_9CLOT
plsX; fatty acid/phospholipid synthesis protein PlsX
L3_129_000G1_scaffold_94_3
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1306..1536
DNA (231bp) protein (77aa)
Acyl carrier protein n=1 Tax=Clostridium sp. CAG:221 RepID=R6FWU4_9CLOT
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=1262780 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:221.;"
acpP; acyl carrier protein
L3_129_000G1_scaffold_94_4
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1668..2363
DNA (696bp) protein (232aa)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=1262780 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:221.;"
rnc; ribonuclease 3 (EC:3.1.26.3)
Ribonuclease 3 n=1 Tax=Clostridium sp. CAG:221 RepID=R6G5E4_9CLOT
L3_129_000G1_scaffold_94_5
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2356..3387
DNA (1032bp) protein (344aa)
Radical SAM domain-containing protein n=1 Tax=Clostridium sp. CAG:221 RepID=R6GQV5_9CLOT
Radical SAM domain-containing protein {ECO:0000313|EMBL:CDB16547.1}; TaxID=1262780 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:221.;"
radical SAM domain-containing protein
L3_129_000G1_scaffold_94_6
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3406..3498
DNA (93bp) protein (31aa)
Uncharacterized protein n=2 Tax=environmental samples RepID=R6FTR8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB16548.1}; TaxID=1262780 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:221.;"
L3_129_000G1_scaffold_94_7
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3517..7074
DNA (3558bp) protein (1186aa)
Chromosome partition protein Smc n=1 Tax=Clostridium sp. CAG:221 RepID=R6G501_9CLOT
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=1262780 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:221.;"
smc; chromosome partition protein Smc
L3_129_000G1_scaffold_94_8
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7085..8002
DNA (918bp) protein (306aa)
Signal recognition particle receptor FtsY n=1 Tax=Clostridium sp. CAG:221 RepID=R6FWU6_9CLOT
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=1262780 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:221.;"
ftsY; signal recognition particle-docking protein FtsY
L3_129_000G1_scaffold_94_9
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8289..8618
DNA (330bp) protein (110aa)
UPF0122 protein BN542_01732 n=1 Tax=Clostridium sp. CAG:221 RepID=R6G5E7_9CLOT
UPF0122 protein BN542_01732 {ECO:0000256|HAMAP-Rule:MF_00245}; TaxID=1262780 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:221.;"
hypothetical protein
L3_129_000G1_scaffold_94_10
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


8636..9988
DNA (1353bp) protein (451aa)
Signal recognition particle protein n=1 Tax=Clostridium sp. CAG:221 RepID=R6GQW0_9CLOT
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1262780 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:221.;"
ffh; signal recognition particle protein
L3_129_000G1_scaffold_94_11
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


10026..10271
DNA (246bp) protein (82aa)
30S ribosomal protein S16 n=2 Tax=environmental samples RepID=R6FTS0_9CLOT
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1262780 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:221.;"
rpsP; ribosomal protein S16
L3_129_000G1_scaffold_94_12
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10318..10557
DNA (240bp) protein (80aa)
UPF0109 protein BN542_01735 n=1 Tax=Clostridium sp. CAG:221 RepID=R6G505_9CLOT
UPF0109 protein BN542_01735 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=1262780 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:221.;"
hypothetical protein
L3_129_000G1_scaffold_94_13
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10663..11160
DNA (498bp) protein (166aa)
Ribosome maturation factor RimM n=1 Tax=Clostridium sp. CAG:221 RepID=R6FWV0_9CLOT
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=1262780 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:221.;"
rimM; 16S rRNA-processing protein RimM
L3_129_000G1_scaffold_94_14
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11150..11863
DNA (714bp) protein (238aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=1262780 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:221.;"
trmD; tRNA (guanine(37)-N(1))-methyltransferase (EC:2.1.1.228)
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Clostridium sp. CAG:221 RepID=R6G5F1_9CLOT
L3_129_000G1_scaffold_94_15
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


11980..12330
DNA (351bp) protein (117aa)
50S ribosomal protein L19 n=1 Tax=Clostridium sp. CAG:221 RepID=R6GQW5_9CLOT
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=1262780 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:221.;"
rplS; 50S ribosomal protein L19
L3_129_000G1_scaffold_94_16
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12448..13338
DNA (891bp) protein (297aa)
Ribosome biogenesis GTPase A n=1 Tax=Clostridium sp. CAG:221 RepID=R6FTS5_9CLOT
Ribosome biogenesis GTPase A {ECO:0000256|PIRNR:PIRNR006230}; TaxID=1262780 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:221.;"
ylqF; ribosome biogenesis GTP-binding protein YlqF
L3_129_000G1_scaffold_94_17
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13340..14158
DNA (819bp) protein (273aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; TaxID=1262780 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:221.;"
Ribonuclease HII n=1 Tax=Clostridium sp. CAG:221 RepID=R6G508_9CLOT
ribonuclease HII family protein
L3_129_000G1_scaffold_94_18
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14155..14523)
DNA (369bp) protein (123aa)
UPF0102 protein BN542_01741 n=1 Tax=Clostridium sp. CAG:221 RepID=R6FWV2_9CLOT
UPF0102 protein BN542_01741 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=1262780 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:221.;"
hypothetical protein
L3_129_000G1_scaffold_94_19
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14634..16154
DNA (1521bp) protein (507aa)
Mg chelatase n=1 Tax=Clostridium sp. CAG:221 RepID=R6G5F4_9CLOT
Mg chelatase {ECO:0000313|EMBL:CDB16561.1}; TaxID=1262780 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:221.;"
sigma-54 interaction domain protein
L3_129_000G1_scaffold_94_20
Clostridium sp. CAG:265, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16163..17218
DNA (1056bp) protein (352aa)
SMF family protein n=1 Tax=Clostridium sp. CAG:265 RepID=R6LMC2_9CLOT
SMF family protein {ECO:0000313|EMBL:CDB75262.1}; TaxID=1262787 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:265.;"
dprA; DNA protecting protein DprA
L3_129_000G1_scaffold_94_21
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17267..19357
DNA (2091bp) protein (697aa)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=1262780 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:221.;"
topA; DNA topoisomerase 1 (EC:5.99.1.2)
DNA topoisomerase 1 n=1 Tax=Clostridium sp. CAG:221 RepID=R6FTS6_9CLOT
L3_129_000G1_scaffold_94_22
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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19481..20257
DNA (777bp) protein (259aa)
GTP-sensing transcriptional pleiotropic repressor CodY n=1 Tax=Clostridium sp. CAG:221 RepID=R6G513_9CLOT
GTP-sensing transcriptional pleiotropic repressor CodY {ECO:0000256|HAMAP-Rule:MF_00621, ECO:0000256|SAAS:SAAS00044533}; TaxID=1262780 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:221.;"
codY; GTP-sensing transcriptional pleiotropic repressor CodY
L3_129_000G1_scaffold_94_23
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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20514..21215
DNA (702bp) protein (234aa)
30S ribosomal protein S2 n=1 Tax=Clostridium sp. CAG:221 RepID=R6FWV6_9CLOT
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=1262780 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:221.;"
rpsB; ribosomal protein S2
L3_129_000G1_scaffold_94_24
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21307..22221
DNA (915bp) protein (305aa)
Elongation factor Ts n=1 Tax=Clostridium sp. CAG:221 RepID=R6G5F8_9CLOT
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=1262780 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:221.;"
tsf; elongation factor Ts
L3_129_000G1_scaffold_94_25
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22292..23005
DNA (714bp) protein (238aa)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197270};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; TaxID=1262780 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:221.;"
pyrH; uridylate kinase PyrH (EC:2.7.4.22)
Uridylate kinase n=1 Tax=Clostridium sp. CAG:221 RepID=R6GQX1_9CLOT
L3_129_000G1_scaffold_94_26
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23015..23572
DNA (558bp) protein (186aa)
Ribosome-recycling factor n=1 Tax=Clostridium sp. CAG:221 RepID=R6FTT1_9CLOT
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=1262780 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:221.;"
frr; ribosome recycling factor
L3_129_000G1_scaffold_94_27
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23626..24384
DNA (759bp) protein (253aa)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=1262780 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:221.;"
uppS; di-trans,poly-cis-decaprenylcistransferase (EC:2.5.1.31)
Isoprenyl transferase n=1 Tax=Clostridium sp. CAG:221 RepID=R6G514_9CLOT
L3_129_000G1_scaffold_94_28
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24400..25194
DNA (795bp) protein (265aa)
Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938}; EC=2.7.7.41 {ECO:0000256|RuleBase:RU003938};; TaxID=1262780 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:221.;"
cdsA; phosphatidate cytidylyltransferase (EC:2.7.7.41)
Phosphatidate cytidylyltransferase n=1 Tax=Clostridium sp. CAG:221 RepID=R6FWW1_9CLOT
L3_129_000G1_scaffold_94_29
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25295..26248
DNA (954bp) protein (318aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:221 RepID=R6G5G3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB16571.1}; TaxID=1262780 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:221.;"
hypothetical protein
L3_129_000G1_scaffold_94_30
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26266..27426
DNA (1161bp) protein (387aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007105};; 1-deoxyxylulose-5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183}; 2-C-methyl-D-erythritol 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00183}; TaxID=1262780 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:221.;"
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Clostridium sp. CAG:221 RepID=R6GQX5_9CLOT
1-deoxy-D-xylulose 5-phosphate reductoisomerase
Displaying items 1-30 of 146 in total

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