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L3_129_000M1_scaffold_196

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_129_000M1_scaffold_196_1
unknown

Not on your lists

comp(87..266)
DNA (180bp) protein (60aa)

This feature has no annotations

L3_129_000M1_scaffold_196_2
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(287..784)
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IPE7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY44013.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
sigV; RNA polymerase ECF(extracytoplasmic function)-type sigma factor (sigma(V))
L3_129_000M1_scaffold_196_3
unknown

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1124..1384
DNA (261bp) protein (87aa)

This feature has no annotations

L3_129_000M1_scaffold_196_4
unknown

Not on your lists

1398..2099
DNA (702bp) protein (234aa)

This feature has no annotations

L3_129_000M1_scaffold_196_5
unknown

Not on your lists

2103..3893
DNA (1791bp) protein (597aa)

This feature has no annotations

L3_129_000M1_scaffold_196_6
unknown

Not on your lists

3853..4368
DNA (516bp) protein (172aa)

This feature has no annotations

L3_129_000M1_scaffold_196_7
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4358..5779
DNA (1422bp) protein (474aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FTE0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA80698.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
UBA/THIF-type NAD/FAD binding protein
L3_129_000M1_scaffold_196_8
unknown

Not on your lists

5736..6464
DNA (729bp) protein (243aa)

This feature has no annotations

L3_129_000M1_scaffold_196_9
unknown

Not on your lists

6458..6943
DNA (486bp) protein (162aa)

This feature has no annotations

L3_129_000M1_scaffold_196_10
unknown

Not on your lists

6931..7710
DNA (780bp) protein (260aa)

This feature has no annotations

L3_129_000M1_scaffold_196_11
unknown

Not on your lists

7779..8696
DNA (918bp) protein (306aa)

This feature has no annotations

L3_129_000M1_scaffold_196_12
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8958..9278
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGP3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45532.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
XRE family transcriptional regulator
L3_129_000M1_scaffold_196_13
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9461..9976
DNA (516bp) protein (172aa)
Amidases related to nicotinamidase n=1 Tax=Clostridium sp. CAG:7 RepID=R5IR50_9CLOT
Amidases related to nicotinamidase {ECO:0000313|EMBL:CCY44575.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
Amidases related to nicotinamidase
L3_129_000M1_scaffold_196_14
[Eubacterium] cellulosolvens, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10350..12011)
DNA (1662bp) protein (554aa)
Uncharacterized protein n=1 Tax=Eubacterium cellulosolvens 6 RepID=I5AR16_EUBCE
Uncharacterized protein {ECO:0000313|EMBL:EIM56239.1}; TaxID=633697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] cellulosolvens 6.;"
L3_129_000M1_scaffold_196_15
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12201..12683
DNA (483bp) protein (161aa)
UPF0178 protein BN653_00559 n=1 Tax=Clostridium sp. CAG:43 RepID=R7AGL8_9CLOT
UPF0178 protein BN653_00559 {ECO:0000256|HAMAP-Rule:MF_00489}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
hypothetical protein
L3_129_000M1_scaffold_196_16
unknown

Not on your lists

12680..12994
DNA (315bp) protein (105aa)

This feature has no annotations

L3_129_000M1_scaffold_196_17
Erysipelotrichaceae bacterium 2_2_44A, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

13046..13654
DNA (609bp) protein (203aa)
Uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=G1VUH4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGX72464.1}; TaxID=457422 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 2_2_44A.;"
Exonuclease RNase T and DNA polymerase III
L3_129_000M1_scaffold_196_18
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14011..14451
DNA (441bp) protein (147aa)
Transposase and inactivated derivatives n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GVL7_9FIRM
Transposase and inactivated derivatives
Transposase and inactivated derivatives {ECO:0000313|EMBL:CBL41859.1}; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
L3_129_000M1_scaffold_196_19
[Clostridium] celerecrescens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14414..15532
DNA (1119bp) protein (373aa)
IS605 OrfB family transposase n=1 Tax=Clostridium hathewayi 12489931 RepID=N9XFK3_9CLOT
Transposase {ECO:0000313|EMBL:KEZ85425.1}; TaxID=29354 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] celerecrescens.;"
transposase IS605
L3_129_000M1_scaffold_196_20
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15834..16895)
DNA (1062bp) protein (354aa)
Phage integrase, SAM-like domain protein n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2DWC7_CLOS4
Phage integrase, SAM-like domain protein {ECO:0000313|EMBL:ERJ01231.1}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
Site-specific recombinase XerD
L3_129_000M1_scaffold_196_21
unknown

Not on your lists

17299..18414
DNA (1116bp) protein (372aa)

This feature has no annotations

L3_129_000M1_scaffold_196_22
unknown

Not on your lists

18463..18771
DNA (309bp) protein (103aa)

This feature has no annotations

L3_129_000M1_scaffold_196_23
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18949..21087
DNA (2139bp) protein (713aa)
Uncharacterized protein n=1 Tax=Clostridium sp. M62/1 RepID=D4C7H0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFE14508.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
hypothetical protein
L3_129_000M1_scaffold_196_24
Poecilia formosa, Poecilia, Cyprinodontiformes, Neopterygii, Chordata, Metazoa

Not on your lists

21116..21877
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Brassica rapa subsp. pekinensis RepID=M4DMX5_BRARP
Uncharacterized protein {ECO:0000313|Ensembl:ENSPFOP00000029536}; TaxID=48698 species="Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia.;" source="Poecilia formosa (Amazon molly) (Limia formosa).;"
hypothetical protein
L3_129_000M1_scaffold_196_25
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21874..26085
DNA (4212bp) protein (1404aa)
Uncharacterized protein n=1 Tax=Clostridium sp. M62/1 RepID=D4C7H1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFE14509.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
Ig domain-containing protein
L3_129_000M1_scaffold_196_26
unknown

Not on your lists

26175..26348
DNA (174bp) protein (58aa)

This feature has no annotations

L3_129_000M1_scaffold_196_27
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26677..27987
DNA (1311bp) protein (437aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:309 RepID=R6ZY48_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD35407.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
protein of unknown function DUF4143
L3_129_000M1_scaffold_196_28
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28208..29068
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:149 RepID=R5MBW7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY82592.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
L3_129_000M1_scaffold_196_29
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29168..44458
DNA (15291bp) protein (5097aa)
Cna protein B-type domain protein n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SNU2_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF07439.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
LPXTG-motif cell wall anchor domain-containing protein
L3_129_000M1_scaffold_196_30
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

44445..45590
DNA (1146bp) protein (382aa)
SrtB family sortase n=1 Tax=Clostridium bolteae 90B8 RepID=R0AEJ8_9CLOT
SrtB family sortase {ECO:0000313|EMBL:ENZ30567.1}; TaxID=997897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90B8.;"
Displaying items 1-30 of 42 in total

View Taxonomy