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L3_129_000M1_scaffold_12

Search features with annotation key words

Displaying items 1-30 of 136 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_129_000M1_scaffold_12_1
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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499..1320
DNA (822bp) protein (274aa)
Hydroxyethylthiazole kinase {ECO:0000256|HAMAP-Rule:MF_00228, ECO:0000256|SAAS:SAAS00137030}; EC=2.7.1.50 {ECO:0000256|HAMAP-Rule:MF_00228, ECO:0000256|SAAS:SAAS00137030};; 4-methyl-5-beta-hydroxyethylthiazole kinase {ECO:0000256|HAMAP-Rule:MF_00228}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
Hydroxyethylthiazole kinase, sugar kinase family (EC:2.7.1.50)
Hydroxyethylthiazole kinase n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2PMQ7_9FIRM
L3_129_000M1_scaffold_12_2
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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1307..1963
DNA (657bp) protein (219aa)
Thiamine-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; Short=TP synthase {ECO:0000256|HAMAP-Rule:MF_00097};; Short=TPS {ECO:0000256|HAMAP-Rule:MF_00097};; EC=2.5.1.3 {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826};; Thiamine-phosphate pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
thiamine-phosphate diphosphorylase (EC:2.5.1.3)
Thiamine-phosphate synthase n=2 Tax=Clostridiales RepID=R5TIG8_9FIRM
L3_129_000M1_scaffold_12_3
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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1960..2688
DNA (729bp) protein (243aa)
Haloacid dehalogenase superfamily subfamily IA variant 3 with third motif having DD or ED n=1 Tax=Roseburia sp. CAG:50 RepID=R5TQ51_9FIRM
Haloacid dehalogenase superfamily subfamily IA variant 3 with third motif having DD or ED {ECO:0000313|EMBL:CCZ65459.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
L3_129_000M1_scaffold_12_4
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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2721..3524
DNA (804bp) protein (268aa)
phosphomethylpyrimidine kinase (EC:2.7.4.7)
Phosphomethylpyrimidine kinase n=2 Tax=Clostridiales RepID=R5TIE9_9FIRM
Phosphomethylpyrimidine kinase {ECO:0000313|EMBL:CCZ65458.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
L3_129_000M1_scaffold_12_5
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3634..4167
DNA (534bp) protein (178aa)
Protein ThiW n=2 Tax=Clostridiales RepID=R5U8Y2_9FIRM
Protein ThiW {ECO:0000313|EMBL:ERK51840.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
thiW protein
L3_129_000M1_scaffold_12_6
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4480..5790
DNA (1311bp) protein (437aa)
Phosphomethylpyrimidine synthase {ECO:0000256|HAMAP-Rule:MF_00089}; EC=4.1.99.17 {ECO:0000256|HAMAP-Rule:MF_00089};; Hydroxymethylpyrimidine phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00089}; Thiamine biosynthesis protein ThiC {ECO:0000256|HAMAP-Rule:MF_00089}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
Phosphomethylpyrimidine synthase n=2 Tax=Clostridiales RepID=R5U2W2_9FIRM
hydroxymethylpyrimidine synthase
L3_129_000M1_scaffold_12_7
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5879..6787)
DNA (909bp) protein (303aa)
Antioxidant, AhpC/TSA family n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2RE48_9FIRM
Antioxidant, AhpC/TSA family {ECO:0000313|EMBL:ERK51843.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
Thiol-disulfide isomerase and thioredoxins
L3_129_000M1_scaffold_12_8
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6861..7754)
DNA (894bp) protein (298aa)
4Fe-4S binding domain protein n=1 Tax=Roseburia sp. CAG:50 RepID=R5TQ44_9FIRM
4Fe-4S binding domain protein {ECO:0000313|EMBL:CCZ65454.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
putative iron-sulfur-binding membrane protein
L3_129_000M1_scaffold_12_9
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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7989..8669
DNA (681bp) protein (227aa)
Response regulator receiver domain protein n=1 Tax=Roseburia sp. CAG:50 RepID=R5U8L4_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:CCZ65357.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
response regulator
L3_129_000M1_scaffold_12_10
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8666..9808
DNA (1143bp) protein (381aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2RM97_9FIRM
Signal transduction histidine kinase
L3_129_000M1_scaffold_12_11
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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10120..10701
DNA (582bp) protein (194aa)
Putative manganese efflux pump MntP n=1 Tax=Roseburia sp. CAG:50 RepID=R5TI49_9FIRM
Putative manganese efflux pump MntP {ECO:0000256|HAMAP-Rule:MF_01521}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
Predicted membrane protein
L3_129_000M1_scaffold_12_12
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10827..11777
DNA (951bp) protein (317aa)
K+-dependent Na+/Ca+ exchanger n=2 Tax=Clostridiales RepID=R5TPS2_9FIRM
K+-dependent Na+/Ca+ exchanger family protein {ECO:0000313|EMBL:ERK51849.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
hypothetical protein
L3_129_000M1_scaffold_12_13
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11750..12220)
DNA (471bp) protein (157aa)
Fe-S metabolism associated SufE n=1 Tax=Roseburia sp. CAG:50 RepID=R5TI39_9FIRM
Fe-S metabolism associated SufE {ECO:0000313|EMBL:CCZ65353.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
Fe-S metabolism associated SufE
L3_129_000M1_scaffold_12_14
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12339..13643)
DNA (1305bp) protein (435aa)
Permease of the major facilitator superfamily n=1 Tax=Roseburia sp. CAG:50 RepID=R5U8K8_9FIRM
Permease of the major facilitator superfamily {ECO:0000313|EMBL:CCZ65352.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
ProP; major facilitator superfamily permease
L3_129_000M1_scaffold_12_15
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13753..14130)
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:50 RepID=R5U2J9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ65351.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
hypothetical protein
L3_129_000M1_scaffold_12_16
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14224..15759)
DNA (1536bp) protein (512aa)
L-fucose isomerase n=1 Tax=Roseburia sp. CAG:50 RepID=R5TI44_9FIRM
L-fucose isomerase {ECO:0000313|EMBL:CCZ65350.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
FucI; L-fucose isomerase
L3_129_000M1_scaffold_12_17
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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16074..17006
DNA (933bp) protein (311aa)
Transcriptional regulator n=1 Tax=Roseburia sp. CAG:50 RepID=R5TPR8_9FIRM
Transcriptional regulator {ECO:0000313|EMBL:CCZ65349.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
LysR; transcriptional regulator
L3_129_000M1_scaffold_12_18
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17082..18308
DNA (1227bp) protein (409aa)
Cysteine desulfurase {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216}; EC=2.8.1.7 {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216};; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
Cysteine desulfurase n=1 Tax=Roseburia sp. CAG:50 RepID=R5TI34_9FIRM
CsdB; selenocysteine lyase
L3_129_000M1_scaffold_12_19
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18305..19201
DNA (897bp) protein (299aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:50 RepID=R5U8K4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ65347.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
hypothetical protein
L3_129_000M1_scaffold_12_20
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19492..21015
DNA (1524bp) protein (508aa)
L-fucose isomerase n=1 Tax=Roseburia sp. CAG:50 RepID=R5U2J4_9FIRM
L-fucose isomerase {ECO:0000313|EMBL:CCZ65346.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
FucI; L-fucose isomerase
L3_129_000M1_scaffold_12_21
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21015..21434
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:50 RepID=R5TI41_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ65345.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
L3_129_000M1_scaffold_12_22
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21431..21910
DNA (480bp) protein (160aa)
SufE protein probably involved in Fe-S center assembly n=1 Tax=Roseburia sp. CAG:50 RepID=R5TPR3_9FIRM
SufE protein probably involved in Fe-S center assembly {ECO:0000313|EMBL:CCZ65344.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
SufE protein probably involved in Fe-S center assembly
L3_129_000M1_scaffold_12_23
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21971..23311
DNA (1341bp) protein (447aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:50 RepID=R5TI28_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ65343.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
hypothetical protein
L3_129_000M1_scaffold_12_24
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23559..24044
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2QYP3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK43857.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
hypothetical protein
L3_129_000M1_scaffold_12_25
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24332..25696
DNA (1365bp) protein (455aa)
MATE efflux family protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2PI67_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:ERK43856.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
putative efflux protein, MATE family
L3_129_000M1_scaffold_12_26
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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25894..26355
DNA (462bp) protein (154aa)
Chaperone family protein, Hsp20 family n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2PJD3_9FIRM
Chaperone family protein, Hsp20 family {ECO:0000313|EMBL:ERK43854.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
hypothetical protein
L3_129_000M1_scaffold_12_27
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26444..27823)
DNA (1380bp) protein (460aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:50 RepID=R5TJS8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ65968.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
putative efflux protein, MATE family
L3_129_000M1_scaffold_12_28
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


28190..30166
DNA (1977bp) protein (659aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01228}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
Methionine--tRNA ligase n=1 Tax=Roseburia sp. CAG:50 RepID=R5TRP9_9FIRM
methionyl-tRNA synthetase
L3_129_000M1_scaffold_12_29
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30166..30933
DNA (768bp) protein (256aa)
Hydrolase, TatD family n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2P0C0_9FIRM
Hydrolase, TatD family {ECO:0000313|EMBL:ERK43850.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
hypothetical protein
L3_129_000M1_scaffold_12_30
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


30972..31856
DNA (885bp) protein (295aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
dimethyladenosine transferase (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase A n=2 Tax=Clostridiales RepID=R5U4C6_9FIRM
Displaying items 1-30 of 136 in total

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