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L3_129_000M1_scaffold_226

Search features with annotation key words

Displaying items 1-30 of 55 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_129_000M1_scaffold_226_1
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7..1332)
DNA (1326bp) protein (442aa)
Electron transport complex, RnfABCDGE type, C subunit n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2Q5K1_9FIRM
Electron transport complex subunit C {ECO:0000256|HAMAP-Rule:MF_00461}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
electron transport complex, RnfABCDGE type, C subunit
L3_129_000M1_scaffold_226_2
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1527..2645
DNA (1119bp) protein (373aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:50 RepID=R5TQ40_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ65449.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
hypothetical protein
L3_129_000M1_scaffold_226_3
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(2768..3850)
DNA (1083bp) protein (361aa)
Putative ribosomal protein S1 n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2Q4K3_9FIRM
Putative ribosomal protein S1 {ECO:0000313|EMBL:ERK51321.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
Ribosomal protein S1
L3_129_000M1_scaffold_226_4
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3831..4712)
DNA (882bp) protein (294aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
(E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) (EC:1.17.1.2)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2RKT2_9FIRM
L3_129_000M1_scaffold_226_5
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4709..5383)
DNA (675bp) protein (225aa)
Cytidylate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; Short=CK {ECO:0000256|HAMAP-Rule:MF_00238};; EC=2.7.4.25 {ECO:0000256|HAMAP-Rule:MF_00238};; Cytidine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
cytidylate kinase (EC:2.7.4.14)
Cytidylate kinase n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2RCK3_9FIRM
L3_129_000M1_scaffold_226_6
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5493..6740)
DNA (1248bp) protein (416aa)
Flavoprotein family protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2Q5K7_9FIRM
Flavoprotein family protein {ECO:0000313|EMBL:ERK51324.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
hypothetical protein
L3_129_000M1_scaffold_226_7
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6809..7756)
DNA (948bp) protein (316aa)
SIS domain protein n=2 Tax=Clostridiales RepID=U2PLA3_9FIRM
N-acetylmannosamine kinase {ECO:0000313|EMBL:CCZ65462.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
N-acetylmannosamine kinase
L3_129_000M1_scaffold_226_8
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7866..9173)
DNA (1308bp) protein (436aa)
Serine-type D-Ala-D-Ala carboxypeptidase n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2Q4K6_9FIRM
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:ERK51326.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
L3_129_000M1_scaffold_226_9
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9277..11010)
DNA (1734bp) protein (578aa)
hndD1; NADP-reducing hydrogenase subunit HndC (EC:1.12.1.3)
Putative ferredoxin hydrogenase HydA1 n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2RKT9_9FIRM
Hydrogenase Fe-only {ECO:0000313|EMBL:CCZ65464.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
L3_129_000M1_scaffold_226_10
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11004..12836)
DNA (1833bp) protein (611aa)
sudA3; sulfide dehydrogenase subunit alpha (EC:1.8.-.- 1.18.1.2)
Pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2RCK8_9FIRM
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:ERK51328.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
L3_129_000M1_scaffold_226_11
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13155..13724)
DNA (570bp) protein (190aa)
Segregation and condensation protein B n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2Q5L2_9FIRM
Segregation and condensation protein B {ECO:0000256|HAMAP-Rule:MF_01804, ECO:0000256|SAAS:SAAS00086417}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
segregation and condensation protein B
L3_129_000M1_scaffold_226_12
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13732..14547)
DNA (816bp) protein (272aa)
Segregation and condensation protein A n=2 Tax=Clostridiales RepID=U2PLA9_9FIRM
Segregation and condensation protein A {ECO:0000256|HAMAP-Rule:MF_01805, ECO:0000256|SAAS:SAAS00093938}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
segregation and condensation protein A
L3_129_000M1_scaffold_226_13
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14750..16000
DNA (1251bp) protein (417aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:50 RepID=R5U8Z9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ65467.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
Serine-type D-Ala-D-Ala carboxypeptidase
L3_129_000M1_scaffold_226_14
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16063..17106)
DNA (1044bp) protein (348aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:50 RepID=R5TIG0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ65468.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
Subtilisin-like serine proteases
L3_129_000M1_scaffold_226_15
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17128..19212)
DNA (2085bp) protein (695aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
Polyribonucleotide nucleotidyltransferase n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2RCL5_9FIRM
polynucleotide phosphorylase/polyadenylase
L3_129_000M1_scaffold_226_16
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(19462..19728)
DNA (267bp) protein (89aa)
30S ribosomal protein S15 n=2 Tax=Clostridiales RepID=U2Q5L6_9FIRM
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
SSU ribosomal protein S15P
L3_129_000M1_scaffold_226_17
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19891..20808)
DNA (918bp) protein (306aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
FAD synthase n=1 Tax=Roseburia sp. CAG:50 RepID=R5U2X7_9FIRM
RibF; FAD synthase
L3_129_000M1_scaffold_226_18
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20818..21723)
DNA (906bp) protein (302aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
tRNA pseudouridine synthase B (EC:4.2.1.70 5.4.99.12)
tRNA pseudouridine synthase B n=1 Tax=Roseburia sp. CAG:50 RepID=R5U904_9FIRM
L3_129_000M1_scaffold_226_19
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21705..22700)
DNA (996bp) protein (332aa)
DHHA1 domain protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2RKK3_9FIRM
DHHA1 domain protein {ECO:0000313|EMBL:ERK51237.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
Exopolyphosphatase-related proteins
L3_129_000M1_scaffold_226_20
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22711..23076)
DNA (366bp) protein (122aa)
Ribosome-binding factor A n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2RCC1_9FIRM
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
RbfA; ribosome-binding factor A
L3_129_000M1_scaffold_226_21
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23094..25745)
DNA (2652bp) protein (884aa)
Translation initiation factor IF-2 n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2Q5B4_9FIRM
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
bacterial translation initiation factor 2 (bIF-2)
L3_129_000M1_scaffold_226_22
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25758..26078)
DNA (321bp) protein (107aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5U909_9FIRM
Ribosomal protein L7Ae {ECO:0000313|EMBL:ERK51240.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
hypothetical protein
L3_129_000M1_scaffold_226_23
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26068..26337)
DNA (270bp) protein (90aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5TIH2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ65478.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
Predicted nucleic-acid-binding protein implicated in transcription termination
L3_129_000M1_scaffold_226_24
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26330..27571)
DNA (1242bp) protein (414aa)
Transcription termination factor NusA n=2 Tax=Clostridiales RepID=R5TQ74_9FIRM
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
transcription elongation factor NusA
L3_129_000M1_scaffold_226_25
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27601..28068)
DNA (468bp) protein (156aa)
Ribosome maturation factor RimP n=2 Tax=Clostridiales RepID=U2RCC7_9FIRM
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
ribosome maturation protein RimP
L3_129_000M1_scaffold_226_26
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28194..28637)
DNA (444bp) protein (148aa)
Transcriptional regulator, Fur family n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2Q5C0_9FIRM
Transcriptional regulator, Fur family {ECO:0000313|EMBL:ERK51244.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
Fe2+/Zn2+ uptake regulation proteins
L3_129_000M1_scaffold_226_27
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28848..29063)
DNA (216bp) protein (72aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=U2PL24_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ65482.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
L3_129_000M1_scaffold_226_28
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29050..29991)
DNA (942bp) protein (314aa)
Hydrolase carbon-nitrogen family n=1 Tax=Roseburia sp. CAG:50 RepID=R5TIH8_9FIRM
Hydrolase carbon-nitrogen family {ECO:0000313|EMBL:CCZ65483.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
putative amidohydrolase
L3_129_000M1_scaffold_226_29
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29988..30911)
DNA (924bp) protein (308aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:50 RepID=R5TQ81_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ65484.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
codB; Cytosine permease
L3_129_000M1_scaffold_226_30
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30912..31244)
DNA (333bp) protein (111aa)
Cytosine permease n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2RKL3_9FIRM
Cytosine permease {ECO:0000313|EMBL:ERK51247.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
codB; cytosine permease
Displaying items 1-30 of 55 in total

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