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L3_129_000M1_scaffold_470

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_129_000M1_scaffold_470_1
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(251..2080)
DNA (1830bp) protein (610aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5TG74_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ64680.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
hypothetical protein
L3_129_000M1_scaffold_470_2
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2422..3054
DNA (633bp) protein (211aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5TMX0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ64679.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
single-stranded DNA-binding protein
L3_129_000M1_scaffold_470_3
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3196..3687
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2QZ03_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK46518.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
BtuR; ATP:corrinoid adenosyltransferase
L3_129_000M1_scaffold_470_4
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4121..5008
DNA (888bp) protein (296aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
4-hydroxy-tetrahydrodipicolinate synthase n=2 Tax=Clostridiales RepID=R5U6K8_9FIRM
hypothetical protein
L3_129_000M1_scaffold_470_5
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5086..5850
DNA (765bp) protein (255aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
4-hydroxy-tetrahydrodipicolinate reductase n=2 Tax=Clostridiales RepID=R5U0K1_9FIRM
hypothetical protein
L3_129_000M1_scaffold_470_6
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5885..7855
DNA (1971bp) protein (657aa)
Fructose-1,6-bisphosphatase class 3 {ECO:0000256|HAMAP-Rule:MF_01854}; Short=FBPase class 3 {ECO:0000256|HAMAP-Rule:MF_01854};; EC=3.1.3.11 {ECO:0000256|HAMAP-Rule:MF_01854};; D-fructose-1,6-bisphosphate 1-phosphohydrolase class 3 {ECO:0000256|HAMAP-Rule:MF_01854}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
Fructose-1,6-bisphosphatase class 3 n=2 Tax=Clostridiales RepID=R5TG70_9FIRM
hypothetical protein
L3_129_000M1_scaffold_470_7
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8090..8728
DNA (639bp) protein (213aa)
Transcriptional regulator, MarR family n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2QYZ9_9FIRM
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ERK46513.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
Transcriptional regulators
L3_129_000M1_scaffold_470_8
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8776..11103
DNA (2328bp) protein (776aa)
ABC-type multidrug transport system ATPase and permease components n=1 Tax=Roseburia sp. CAG:50 RepID=R5TG54_9FIRM
ABC-type multidrug transport system ATPase and permease components {ECO:0000313|EMBL:CCZ64673.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
ABC-type multidrug transport system, ATPase and permease components
L3_129_000M1_scaffold_470_9
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11096..12943
DNA (1848bp) protein (616aa)
ABC-type multidrug transport system ATPase and permease components n=1 Tax=Roseburia sp. CAG:50 RepID=R5U6K3_9FIRM
ABC-type multidrug transport system ATPase and permease components {ECO:0000313|EMBL:CCZ64672.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
ABC-type multidrug transport system, ATPase and permease components
L3_129_000M1_scaffold_470_10
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13184..14518)
DNA (1335bp) protein (445aa)
MATE efflux family protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2P7Q2_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:ERK46510.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
MatE efflux family protein
L3_129_000M1_scaffold_470_11
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14895..15905)
DNA (1011bp) protein (337aa)
Aspartate--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_00555, ECO:0000256|SAAS:SAAS00088413}; EC=6.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00555, ECO:0000256|SAAS:SAAS00088403};; Asparagine synthetase A {ECO:0000256|HAMAP-Rule:MF_00555}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
aspartate--ammonia ligase, AsnA-type (EC:6.3.1.1)
Aspartate--ammonia ligase n=2 Tax=Clostridiales RepID=R5TQQ4_9FIRM
L3_129_000M1_scaffold_470_12
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16089..16697
DNA (609bp) protein (203aa)
HD domain protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2P7Y0_9FIRM
HD domain protein {ECO:0000313|EMBL:ERK46605.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
hydrolases of HD superfamily
L3_129_000M1_scaffold_470_13
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16799..17731
DNA (933bp) protein (311aa)
Amidohydrolase 2 n=2 Tax=Clostridiales RepID=R5U3A9_9FIRM
Amidohydrolase 2 {ECO:0000313|EMBL:CCZ65631.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
putative metal-dependent hydrolase of the TIM-barrel fold protein
L3_129_000M1_scaffold_470_14
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17909..18850
DNA (942bp) protein (314aa)
L-lactate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00488}; Short=L-LDH {ECO:0000256|HAMAP-Rule:MF_00488};; EC=1.1.1.27 {ECO:0000256|HAMAP-Rule:MF_00488};; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
L-lactate dehydrogenase n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2QZ73_9FIRM
L-lactate dehydrogenase
L3_129_000M1_scaffold_470_15
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19182..19856
DNA (675bp) protein (225aa)
Hydrolase, NUDIX family n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2R7C9_9FIRM
Hydrolase, NUDIX family {ECO:0000313|EMBL:ERK46602.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
NUDIX domain.
L3_129_000M1_scaffold_470_16
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20077..20757
DNA (681bp) protein (227aa)
Orotate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216328}; Short=OPRT {ECO:0000256|HAMAP-Rule:MF_01208};; Short=OPRTase {ECO:0000256|HAMAP-Rule:MF_01208};; EC=2.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216337};; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
orotate phosphoribosyltransferase (EC:2.4.2.10)
Orotate phosphoribosyltransferase n=2 Tax=Clostridiales RepID=R5TQQ9_9FIRM
L3_129_000M1_scaffold_470_17
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20769..21257
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:50 RepID=R5TIY5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ65635.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
Glycopeptide antibiotics resistance protein
L3_129_000M1_scaffold_470_18
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21349..21693
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:50 RepID=R5U3B5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ65636.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
L3_129_000M1_scaffold_470_19
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21716..23785
DNA (2070bp) protein (690aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:50 RepID=R5U9I8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ65637.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
hypothetical protein
L3_129_000M1_scaffold_470_20
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23977..24483
DNA (507bp) protein (169aa)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
N5-carboxyaminoimidazole ribonucleotide mutase n=2 Tax=Clostridiales RepID=R5TIW0_9FIRM
PurE; phosphoribosylcarboxyaminoimidazole mutase
L3_129_000M1_scaffold_470_21
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24575..25600
DNA (1026bp) protein (342aa)
Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370}; EC=6.3.3.1 {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370};; AIR synthase {ECO:0000256|HAMAP-Rule:MF_00741}; AIRS {ECO:0000256|HAMAP-Rule:MF_00741}; Phosphoribosyl-aminoimidazole synthetase {ECO:0000256|HAMAP-Rule:MF_00741}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
phosphoribosylaminoimidazole synthetase (EC:6.3.3.1)
Phosphoribosylformylglycinamidine cyclo-ligase n=2 Tax=Clostridiales RepID=R5TQR2_9FIRM
L3_129_000M1_scaffold_470_22
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25594..26223
DNA (630bp) protein (210aa)
Phosphoribosylglycinamide formyltransferase {ECO:0000256|HAMAP-Rule:MF_01930}; EC=2.1.2.2 {ECO:0000256|HAMAP-Rule:MF_01930};; 5'-phosphoribosylglycinamide transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; GAR transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase (EC:2.1.2.2)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5TIY9_9FIRM
L3_129_000M1_scaffold_470_23
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26225..27499
DNA (1275bp) protein (425aa)
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; Phosphoribosylglycinamide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
Phosphoribosylamine--glycine ligase n=2 Tax=Clostridiales RepID=R5U3B8_9FIRM
PurD; phosphoribosylamine-glycine ligase
L3_129_000M1_scaffold_470_24
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27503..28120
DNA (618bp) protein (206aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5U9J1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ65642.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
hypothetical protein
L3_129_000M1_scaffold_470_25
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28206..30302)
DNA (2097bp) protein (699aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:50 RepID=R5TIW3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ65643.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
hypothetical protein
L3_129_000M1_scaffold_470_26
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30277..31176)
DNA (900bp) protein (300aa)
ABC transporter, ATP-binding protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2REU0_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ERK49267.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
ABC-type multidrug transport system, ATPase component
L3_129_000M1_scaffold_470_27
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31173..31547)
DNA (375bp) protein (125aa)
Predicted transcriptional regulator n=2 Tax=Clostridiales RepID=R5TIZ2_9FIRM
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ERK49266.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
putative transcriptional regulator
L3_129_000M1_scaffold_470_28
unknown

Not on your lists

31622..31807
DNA (186bp) protein (62aa)

This feature has no annotations

L3_129_000M1_scaffold_470_29
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31765..32556)
DNA (792bp) protein (264aa)
ABC transporter, permease protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2PFD8_9FIRM
ABC transporter, permease protein {ECO:0000313|EMBL:ERK49265.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-)
L3_129_000M1_scaffold_470_30
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32804..33643
DNA (840bp) protein (280aa)
Transcriptional regulator, AraC family n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2PZU4_9FIRM
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ERK49264.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
AraC family transcriptional regulator
Displaying items 1-30 of 33 in total

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