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L3_129_000M1_scaffold_734

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_129_000M1_scaffold_734_1
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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240..548
DNA (309bp) protein (103aa)
Helix-turn-helix n=1 Tax=Roseburia sp. CAG:50 RepID=R5TNW9_9FIRM
Helix-turn-helix {ECO:0000313|EMBL:CCZ65009.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
Helix-turn-helix.
L3_129_000M1_scaffold_734_2
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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655..1167
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2PUA2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK47349.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
hypothetical protein
L3_129_000M1_scaffold_734_3
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1691..2866
DNA (1176bp) protein (392aa)
Uncharacterized protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2PTA4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK47351.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
hypothetical protein
L3_129_000M1_scaffold_734_4
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2992..3846
DNA (855bp) protein (285aa)
Phospholipase, patatin family n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2R9G8_9FIRM
Phospholipase, patatin family {ECO:0000313|EMBL:ERK47352.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
Predicted esterase of the alpha-beta hydrolase superfamily
L3_129_000M1_scaffold_734_5
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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4029..5039
DNA (1011bp) protein (337aa)
Phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054336}; EC=2.3.1.n2 {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054327};; Acyl-ACP phosphotransacylase {ECO:0000256|HAMAP-Rule:MF_00019}; Acyl-[acyl-carrier-protein]--phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; Phosphate-acyl-ACP acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
Phosphate acyltransferase n=1 Tax=Roseburia sp. CAG:50 RepID=R5THA2_9FIRM
phosphate:acyl-[acyl carrier protein] acyltransferase
L3_129_000M1_scaffold_734_6
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5061..5288
DNA (228bp) protein (76aa)
Acyl carrier protein n=2 Tax=Clostridiales RepID=R5TNW5_9FIRM
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
acyl carrier protein
L3_129_000M1_scaffold_734_7
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5371..6063
DNA (693bp) protein (231aa)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
RNAse III (EC:3.1.26.3)
Ribonuclease 3 n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2PA09_9FIRM
L3_129_000M1_scaffold_734_8
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6085..9654
DNA (3570bp) protein (1190aa)
Chromosome partition protein Smc n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2PTB0_9FIRM
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
chromosome segregation protein SMC
L3_129_000M1_scaffold_734_9
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9703..10644
DNA (942bp) protein (314aa)
Signal recognition particle receptor FtsY n=2 Tax=Clostridiales RepID=R5TH89_9FIRM
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
signal recognition particle-docking protein FtsY
L3_129_000M1_scaffold_734_10
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10637..11857
DNA (1221bp) protein (407aa)
Threonine dehydratase medium form n=2 Tax=Clostridiales RepID=R5TNV4_9FIRM
Threonine ammonia-lyase {ECO:0000313|EMBL:ERK47358.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
threonine dehydratase
L3_129_000M1_scaffold_734_11
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12182..12970)
DNA (789bp) protein (263aa)
amino acid ABC transporter ATP-binding protein, PAAT family (TC 3.A.1.3.-) (EC:3.6.3.21)
Amino acid ABC transporter ATP-binding protein PAAT family (TC 3.A.1.3.-) n=2 Tax=Clostridiales RepID=R5TH63_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ERK47224.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
L3_129_000M1_scaffold_734_12
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12986..13669)
DNA (684bp) protein (228aa)
ABC transporter permease protein n=2 Tax=Clostridiales RepID=R5U7L2_9FIRM
ABC transporter permease protein {ECO:0000313|EMBL:CCZ64997.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
amino acid ABC transporter membrane protein, PAAT family (TC 3.A.1.3.-)
L3_129_000M1_scaffold_734_13
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14029..14874)
DNA (846bp) protein (282aa)
ABC transporter, substrate-binding protein, family 3 n=2 Tax=Clostridiales RepID=U2PSY0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ64996.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-)
L3_129_000M1_scaffold_734_14
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15159..16799)
DNA (1641bp) protein (547aa)
ATPase components of ABC transporters with duplicated ATPase domains n=2 Tax=Clostridiales RepID=R5TH62_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ERK47227.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
ATPase components of ABC transporters with duplicated ATPase domains
L3_129_000M1_scaffold_734_15
unknown

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17135..17236
DNA (102bp) protein (34aa)

This feature has no annotations

L3_129_000M1_scaffold_734_16
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17400..20936
DNA (3537bp) protein (1179aa)
Pyruvate-flavodoxin oxidoreductase {ECO:0000256|PIRNR:PIRNR000159}; EC=1.2.7.- {ECO:0000256|PIRNR:PIRNR000159};; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
Pyruvate-flavodoxin oxidoreductase n=2 Tax=Clostridiales RepID=U2PTX7_9FIRM
hypothetical protein
L3_129_000M1_scaffold_734_17
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21103..22530
DNA (1428bp) protein (476aa)
Putative FeS-containing Cyanobacterial-specific oxidoreductase n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2P9M7_9FIRM
Putative FeS-containing Cyanobacterial-specific oxidoreductase {ECO:0000313|EMBL:ERK47230.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
hypothetical protein
L3_129_000M1_scaffold_734_18
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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22738..24063
DNA (1326bp) protein (442aa)
GTPase Der n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2PSY3_9FIRM
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
hypothetical protein
L3_129_000M1_scaffold_734_19
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24063..24707
DNA (645bp) protein (215aa)
Glycerol-3-phosphate acyltransferase n=2 Tax=Clostridiales RepID=R5TXM9_9FIRM
Glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-PO4 G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-phosphate--glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Lysophosphatidic acid synthase {ECO:0000256|HAMAP-Rule:MF_01043}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
hypothetical protein
L3_129_000M1_scaffold_734_20
unknown

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comp(24844..24963)
DNA (120bp) protein (40aa)

This feature has no annotations

Displaying 20 items

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