ggKbase home page

L3_129_030G1_scaffold_50

Search features with annotation key words

Displaying items 1-30 of 148 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_129_030G1_scaffold_50_1
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(538..1005)
DNA (468bp) protein (156aa)
Antioxidant, AhpC/TSA family n=3 Tax=Clostridium perfringens RepID=B1BLN7_CLOPF
Antioxidant, AhpC/TSA family {ECO:0000313|EMBL:EDT22405.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
AhpC/TSA family protein
L3_129_030G1_scaffold_50_2
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1677..2423
DNA (747bp) protein (249aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
Peptidyl-prolyl cis-trans isomerase family protein n=9 Tax=Clostridium perfringens RepID=H7CS63_CLOPF
peptidyl-prolyl cis-trans isomerase
L3_129_030G1_scaffold_50_3
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2887..3699
DNA (813bp) protein (271aa)
ABC-2 type transporter, permease protein n=3 Tax=Clostridium perfringens RepID=B1BXQ2_CLOPF
ABC transporter
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
L3_129_030G1_scaffold_50_4
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3717..4889
DNA (1173bp) protein (391aa)
ABC transporter, ATP-binding protein n=9 Tax=Clostridium perfringens RepID=H7CS65_CLOPF
ABC transporter ATP-binding protein
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EIA18476.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
L3_129_030G1_scaffold_50_5
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4903..6186
DNA (1284bp) protein (428aa)
Glycosyl transferase, group 1 family protein {ECO:0000313|EMBL:EDT13525.1}; EC=2.4.1.- {ECO:0000313|EMBL:EDT13525.1};; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
Teichuronic acid biosynthesis glycosyl transferase n=10 Tax=Clostridium perfringens RepID=H7CS66_CLOPF
teichuronic acid biosynthesis glycosyl transferase
L3_129_030G1_scaffold_50_6
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6205..7440
DNA (1236bp) protein (412aa)
glycoside hydrolase family protein (EC:2.4.1.-)
Glycosyl transferase, group 1 family protein {ECO:0000313|EMBL:EDT13528.1}; EC=2.4.1.- {ECO:0000313|EMBL:EDT13528.1};; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
Glycosyl transferase, group 1 family protein n=8 Tax=Clostridium perfringens RepID=H7CS67_CLOPF
L3_129_030G1_scaffold_50_7
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7454..8635
DNA (1182bp) protein (394aa)
ABC transporter, ATP-binding protein n=5 Tax=Clostridium perfringens RepID=Q0SWB1_CLOPS
teichoic acid ABC transporter ATP-binding protein
Probable ABC transporter {ECO:0000313|EMBL:BAB79979.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L3_129_030G1_scaffold_50_8
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8750..10183
DNA (1434bp) protein (478aa)
glycoside hydrolase family protein (EC:2.4.1.-)
Glycosyl transferase, group 1 family protein n=1 Tax=Clostridium perfringens NCTC 8239 RepID=B1RTL6_CLOPF
Glycosyl transferase, group 1 family protein {ECO:0000313|EMBL:EIA18480.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
L3_129_030G1_scaffold_50_9
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10320..10973)
DNA (654bp) protein (218aa)
Haloacid dehalogenase, IA family protein n=2 Tax=Clostridium perfringens RepID=Q0SWA9_CLOPS
haloacid dehalogenase, IA family protein
Haloacid dehalogenase, IA family protein {ECO:0000313|EMBL:ABG85510.1}; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain SM101 / Type A).;"
L3_129_030G1_scaffold_50_10
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11056..12405)
DNA (1350bp) protein (450aa)
[Fe] hydrogenase n=1 Tax=Clostridium perfringens NCTC 8239 RepID=B1RTL8_CLOPF
[Fe] hydrogenase
[Fe] hydrogenase {ECO:0000313|EMBL:EDT70458.1}; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1721.;"
L3_129_030G1_scaffold_50_11
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12544..12690
DNA (147bp) protein (49aa)
Uncharacterized protein n=9 Tax=Clostridium perfringens RepID=H7CS72_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDT25608.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
L3_129_030G1_scaffold_50_12
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13107..13397
DNA (291bp) protein (97aa)
Uncharacterized protein n=4 Tax=Clostridium perfringens RepID=H7CS73_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIA18484.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
L3_129_030G1_scaffold_50_13
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13582..14880
DNA (1299bp) protein (433aa)
SagA protein n=4 Tax=Clostridium perfringens RepID=H7CS74_CLOPF
SagA protein {ECO:0000313|EMBL:EIA18485.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
SagA protein
L3_129_030G1_scaffold_50_14
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15054..15824
DNA (771bp) protein (257aa)
Uncharacterized protein n=2 Tax=Clostridium perfringens RepID=B1RTM1_CLOPF
Uncharacterized protein {ECO:0000313|EMBL:EDT25610.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
hypothetical protein
L3_129_030G1_scaffold_50_15
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15827..16669
DNA (843bp) protein (281aa)
tetrapyrrole methylase (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
Ribosomal RNA small subunit methyltransferase I n=7 Tax=Clostridium perfringens RepID=H7CS77_CLOPF
L3_129_030G1_scaffold_50_16
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16981..17220)
DNA (240bp) protein (80aa)
AbrB family transcriptional regulator n=6 Tax=Clostridium perfringens RepID=H7CS78_CLOPF
AbrB family transcriptional regulator
AbrB family transcriptional regulator {ECO:0000313|EMBL:EIA18400.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
L3_129_030G1_scaffold_50_17
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17912..18511
DNA (600bp) protein (200aa)
Uncharacterized protein n=8 Tax=Clostridium perfringens RepID=Q8XNQ0_CLOPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAB79988.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L3_129_030G1_scaffold_50_18
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18548..19423)
DNA (876bp) protein (292aa)
Putative aldose 1-epimerase n=2 Tax=Clostridium perfringens RepID=B1BK11_CLOPF
Putative aldose 1-epimerase {ECO:0000313|EMBL:EDS79912.1}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
aldose 1-epimerase
L3_129_030G1_scaffold_50_19
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19534..20556)
DNA (1023bp) protein (341aa)
Putative transcriptional regulator n=1 Tax=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) RepID=Q0TUF0_CLOP1
transcriptional regulator
Probable transcriptional regulator {ECO:0000313|EMBL:BAB79990.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L3_129_030G1_scaffold_50_20
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20732..21583
DNA (852bp) protein (284aa)
YihY family protein n=3 Tax=Clostridium perfringens RepID=H7CS82_CLOPF
YihY family protein {ECO:0000313|EMBL:EIA18404.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
hypothetical protein
L3_129_030G1_scaffold_50_21
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21644..22630)
DNA (987bp) protein (329aa)
UDP-glucose 4-epimerase {ECO:0000313|EMBL:EDT23696.1}; EC=5.1.3.2 {ECO:0000313|EMBL:EDT23696.1};; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
UDP-glucose 4-epimerase n=2 Tax=Clostridium perfringens RepID=B1R7X3_CLOPF
galE; UDP-glucose 4-epimerase
L3_129_030G1_scaffold_50_22
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22784..23128
DNA (345bp) protein (115aa)
Single-stranded DNA-binding protein n=11 Tax=Clostridium perfringens RepID=H7CS84_CLOPF
single-strand binding protein family
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|PIRNR:PIRNR002070}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
L3_129_030G1_scaffold_50_23
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23203..24453)
DNA (1251bp) protein (417aa)
Putative uncharacterized protein n=1 Tax=Clostridium perfringens WAL-14572 RepID=H1CU15_CLOPF
metallo-beta-lactamase
Metallo-beta-lactamase family protein {ECO:0000313|EMBL:EDT23675.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
L3_129_030G1_scaffold_50_24
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24906..28313)
DNA (3408bp) protein (1136aa)
Endo-beta-N-acetylglucosaminidase n=1 Tax=Clostridium perfringens B str. ATCC 3626 RepID=B1R7X6_CLOPF
Endo-beta-N-acetylglucosaminidase {ECO:0000313|EMBL:EDT23685.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
endo-beta-N-acetylglucosaminidase
L3_129_030G1_scaffold_50_25
unknown

Not on your lists

28551..28709
DNA (159bp) protein (53aa)

This feature has no annotations

L3_129_030G1_scaffold_50_26
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28782..28988
DNA (207bp) protein (69aa)
Uncharacterized protein n=9 Tax=Clostridium perfringens RepID=H7CS87_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIA18409.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
L3_129_030G1_scaffold_50_27
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29037..29438
DNA (402bp) protein (134aa)
acpS; 4'-phosphopantetheinyl transferase (EC:2.7.8.7)
Holo-[acyl-carrier-protein] synthase {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00237208}; Short=Holo-ACP synthase {ECO:0000256|HAMAP-Rule:MF_00101};; EC=2.7.8.7 {ECO:0000256|HAMAP-Rule:MF_00101};; 4'-phosphopantetheinyl transferase AcpS {ECO:0000256|HAMAP-Rule:MF_00101}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
Holo-[acyl-carrier-protein] synthase n=7 Tax=Clostridium perfringens RepID=H7CS88_CLOPF
L3_129_030G1_scaffold_50_28
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29425..30924
DNA (1500bp) protein (500aa)
Carbohydrate kinase family protein n=2 Tax=Clostridium perfringens RepID=B1R7X9_CLOPF
Carbohydrate kinase family protein {ECO:0000313|EMBL:EDT23704.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
carbohydrate kinase
L3_129_030G1_scaffold_50_29
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30985..31578
DNA (594bp) protein (198aa)
Uncharacterized protein n=5 Tax=Clostridium perfringens RepID=H7CS89_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIA18411.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
L3_129_030G1_scaffold_50_30
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31824..32090
DNA (267bp) protein (89aa)
Uncharacterized protein n=9 Tax=Clostridium perfringens RepID=H7CS90_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIA18412.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
Displaying items 1-30 of 148 in total

View Taxonomy