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L3_129_030G1_scaffold_361

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_129_030G1_scaffold_361_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2..313)
DNA (312bp) protein (104aa)
Uncharacterized protein n=2 Tax=Clostridium difficile RepID=G6BA10_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ28547.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L3_129_030G1_scaffold_361_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(347..523)
DNA (177bp) protein (59aa)
Uncharacterized protein n=101 Tax=Clostridium difficile RepID=C9XKQ1_CLODC
hypothetical protein
Uncharacterised protein {ECO:0000313|EMBL:CKH65341.1}; Uncharacterized protein {ECO:0000313|EMBL:CDS84373.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_129_030G1_scaffold_361_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(627..1235)
DNA (609bp) protein (203aa)
Transcriptional regulator, TetR family n=8 Tax=Clostridium difficile RepID=G6BA08_CLODI
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EHJ28545.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
TetR family transcriptional regulator
L3_129_030G1_scaffold_361_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1333..2298)
DNA (966bp) protein (322aa)
Transcriptional regulator, effector binding domain protein n=90 Tax=Clostridium difficile RepID=G6BA07_CLODI
Transcriptional regulator, effector binding domain protein {ECO:0000313|EMBL:EHJ28544.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
Transcriptional regulator, MerR family
L3_129_030G1_scaffold_361_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2335..3228)
DNA (894bp) protein (298aa)
Uncharacterized protein n=8 Tax=Clostridium difficile RepID=G6BA06_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ30369.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
putative membrane protein
L3_129_030G1_scaffold_361_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3484..3921)
DNA (438bp) protein (146aa)
LytTr DNA-binding domain protein n=8 Tax=Clostridium difficile RepID=G6BA05_CLODI
transcriptional regulator
LytTr DNA-binding domain protein {ECO:0000313|EMBL:EHJ30368.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
L3_129_030G1_scaffold_361_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4178..4327)
DNA (150bp) protein (50aa)
Uncharacterized protein n=34 Tax=Clostridium difficile RepID=Q189G4_CLOD6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ67451.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_129_030G1_scaffold_361_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4340..4570)
DNA (231bp) protein (77aa)
Uncharacterized protein n=8 Tax=Clostridium difficile RepID=G6BA03_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ28540.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
hypothetical protein
L3_129_030G1_scaffold_361_9
Larimichthys crocea, Larimichthys, Neopterygii, Chordata, Metazoa

Not on your lists

4609..4923
DNA (315bp) protein (105aa)
Putative membrane protein n=1 Tax=Clostridium difficile Y165 RepID=T4DDD5_CLODI
Splicing factor 3A subunit 2 {ECO:0000313|EMBL:KKF16584.1}; Flags: Fragment;; TaxID=215358 species="Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Sciaenidae; Larimichthys.;" source="Larimichthys crocea (Large yellow croaker) (Pseudosciaena crocea).;"
hypothetical protein
L3_129_030G1_scaffold_361_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5194..5415)
DNA (222bp) protein (74aa)
Uncharacterized protein n=6 Tax=Clostridium difficile RepID=D5Q0K7_CLODI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCK96533.1}; TaxID=1225722 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E1.;"
L3_129_030G1_scaffold_361_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5840..5980
DNA (141bp) protein (47aa)
Uncharacterized protein n=4 Tax=Clostridium difficile RepID=T3GDP4_CLODI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE02412.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_129_030G1_scaffold_361_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5995..6252
DNA (258bp) protein (86aa)
Uncharacterized protein n=8 Tax=Clostridium difficile RepID=G6BA01_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ28538.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
putative transcriptional regulator, activatorMor
L3_129_030G1_scaffold_361_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6722..7960
DNA (1239bp) protein (413aa)
Conserved phage family protein n=1 Tax=Clostridium difficile CD69 RepID=T3AE08_CLODI
Putative phage protein {ECO:0000313|EMBL:CDT56995.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
putative phage protein
L3_129_030G1_scaffold_361_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8359..9660
DNA (1302bp) protein (434aa)
Replicative DNA helicase n=9 Tax=Clostridium difficile RepID=G6B9Z8_CLODI
Replicative DNA helicase {ECO:0000313|EMBL:EHJ30361.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
phage-related replicative helicase
L3_129_030G1_scaffold_361_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9736..10011
DNA (276bp) protein (92aa)
Uncharacterized protein n=14 Tax=Clostridium difficile RepID=D5Q0L1_CLODI
Putative transcriptional regulator, activator Mor {ECO:0000313|EMBL:CCK89402.1}; TaxID=1215059 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T5.;"
phage positive regulator of late transcription
L3_129_030G1_scaffold_361_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11234..11464
DNA (231bp) protein (77aa)
4Fe-4S binding domain protein n=212 Tax=Clostridium difficile RepID=C9XKR3_CLODC
ferredoxin
Putative ferredoxin {ECO:0000313|EMBL:CCK89413.1}; TaxID=1215059 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T5.;"
L3_129_030G1_scaffold_361_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11457..12038
DNA (582bp) protein (194aa)
Uncharacterized protein n=7 Tax=Clostridium difficile RepID=G6B652_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ33649.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
hypothetical protein
L3_129_030G1_scaffold_361_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12614..13291)
DNA (678bp) protein (226aa)
Uncharacterized protein n=164 Tax=Clostridium difficile RepID=T3IA12_CLODC
Transcriptional regulator, Crp family
Uncharacterized protein {ECO:0000313|EMBL:EQE69319.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_129_030G1_scaffold_361_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13480..14844)
DNA (1365bp) protein (455aa)
MATE efflux family protein n=8 Tax=Clostridium difficile RepID=G6B654_CLODI
MATE efflux family protein {ECO:0000313|EMBL:EHJ31840.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
MATE family drug/sodium antiporter
L3_129_030G1_scaffold_361_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14972..15493
DNA (522bp) protein (174aa)
Uncharacterized protein n=8 Tax=Clostridium difficile RepID=G6B655_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ33652.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
hypothetical protein
L3_129_030G1_scaffold_361_21
unknown

Not on your lists

15625..15714
DNA (90bp) protein (30aa)

This feature has no annotations

L3_129_030G1_scaffold_361_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15932..17011
DNA (1080bp) protein (360aa)
Uncharacterized protein n=6 Tax=Clostridium difficile RepID=G6B656_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ31842.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
hypothetical protein
L3_129_030G1_scaffold_361_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17335..17703
DNA (369bp) protein (123aa)
Uncharacterized protein n=38 Tax=Clostridium difficile RepID=C9XKS0_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL32648.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_129_030G1_scaffold_361_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17820..18623
DNA (804bp) protein (268aa)
Alpha/beta hydrolase fold family protein n=19 Tax=Clostridium difficile RepID=T3PDV0_CLODI
Putative hydrolase {ECO:0000313|EMBL:CCL32649.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
putative hydrolase
L3_129_030G1_scaffold_361_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19015..19905
DNA (891bp) protein (297aa)
Radical SAM superfamily protein n=1 Tax=Clostridium difficile CD69 RepID=T3AF56_CLODI
Radical SAM domain protein {ECO:0000313|EMBL:EHJ33657.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
radical SAM superfamily protein
L3_129_030G1_scaffold_361_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20443..20886
DNA (444bp) protein (148aa)
Acetyltransferase, GNAT family n=80 Tax=Clostridium difficile RepID=G6BYW1_CLODI
acetyltransferase
Acetyltransferase family protein {ECO:0000313|EMBL:EQE69340.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_129_030G1_scaffold_361_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21058..21228
DNA (171bp) protein (57aa)
Uncharacterized protein n=1 Tax=Clostridium difficile CD69 RepID=T3AF66_CLODI
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:EQG78000.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_129_030G1_scaffold_361_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21602..22711
DNA (1110bp) protein (370aa)
Uncharacterized protein n=31 Tax=Clostridium difficile RepID=T2UZ68_CLODI
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CEJ97178.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_129_030G1_scaffold_361_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22916..23404
DNA (489bp) protein (163aa)
Uncharacterized protein n=8 Tax=Clostridium difficile RepID=G6B665_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ31781.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
conserved hypothetical protein
L3_129_030G1_scaffold_361_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23490..23897
DNA (408bp) protein (136aa)
Uncharacterized protein n=8 Tax=Clostridium difficile RepID=G6B666_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ33596.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
hypothetical protein
Displaying items 1-30 of 44 in total

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