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L3_129_030G1_scaffold_464

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_129_030G1_scaffold_464_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

111..680
DNA (570bp) protein (190aa)
Resolvase n=194 Tax=Clostridium difficile RepID=Q181H9_CLOD6
resolvase
Resolvase {ECO:0000313|EMBL:CEK00295.1}; Uncharacterized protein {ECO:0000313|EMBL:CDS90232.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_129_030G1_scaffold_464_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1239..2393
DNA (1155bp) protein (385aa)
mdeA; methionine gamma-lyase (EC:4.4.1.11)
Cys/Met metabolism PLP-dependent enzyme n=8 Tax=Clostridium difficile RepID=G6B3R9_CLODI
Cys/Met metabolism PLP-dependent enzyme {ECO:0000313|EMBL:EHJ33750.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L3_129_030G1_scaffold_464_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2444..3697
DNA (1254bp) protein (418aa)
Major Facilitator Superfamily protein n=161 Tax=Clostridium difficile RepID=T3FZW4_CLODC
major facilitator superfamily transporter
Major Facilitator Superfamily protein {ECO:0000313|EMBL:EQE58758.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_129_030G1_scaffold_464_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3823..5217
DNA (1395bp) protein (465aa)
Solute symporter family protein n=166 Tax=Clostridium difficile RepID=T3G1L2_CLODC
putative sodium:solute symporter
Solute symporter family protein {ECO:0000313|EMBL:EQE58752.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_129_030G1_scaffold_464_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5232..5462
DNA (231bp) protein (77aa)
Uncharacterized protein n=91 Tax=Clostridium difficile RepID=Q181H7_CLOD6
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL24049.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_129_030G1_scaffold_464_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5479..6009
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Clostridium difficile CD22 RepID=T2V753_CLODI
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL24048.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_129_030G1_scaffold_464_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6185..6895
DNA (711bp) protein (237aa)
Uncharacterized protein n=8 Tax=Clostridium difficile RepID=G6B3R2_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ33743.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
hypothetical protein
L3_129_030G1_scaffold_464_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7010..7507
DNA (498bp) protein (166aa)
Uncharacterized protein n=10 Tax=Clostridium difficile RepID=G6B3R1_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ26614.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
hypothetical protein
L3_129_030G1_scaffold_464_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7517..7678
DNA (162bp) protein (54aa)
Uncharacterized protein n=213 Tax=Clostridium difficile RepID=C9XSH5_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQE58762.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_129_030G1_scaffold_464_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7788..8726
DNA (939bp) protein (313aa)
Putative peptidase, M19 family {ECO:0000313|EMBL:CCL24044.1}; EC=3.4.13.19 {ECO:0000313|EMBL:CCL24044.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Membrane dipeptidase family protein n=134 Tax=Clostridium difficile RepID=C9XSH4_CLODC
dipeptidase
L3_129_030G1_scaffold_464_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8810..9670
DNA (861bp) protein (287aa)
Sporulation-specific protease n=217 Tax=Clostridium difficile RepID=Q181G9_CLOD6
peptidase
Sporulation-specific protease {ECO:0000313|EMBL:CCK96060.1}; TaxID=1225722 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E1.;"
L3_129_030G1_scaffold_464_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9776..10084
DNA (309bp) protein (103aa)
Uncharacterized protein n=33 Tax=Clostridium difficile RepID=D5QA10_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EFH05266.1}; TaxID=525259 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile NAP08.;"
hypothetical protein
L3_129_030G1_scaffold_464_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10178..11728
DNA (1551bp) protein (517aa)
LysM domain protein n=105 Tax=Clostridium difficile RepID=D5QA11_CLODI
cell wall hydrolase
Putative phage cell wall hydrolase {ECO:0000313|EMBL:CCK92358.1}; TaxID=1215060 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T20.;"
L3_129_030G1_scaffold_464_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11846..12736
DNA (891bp) protein (297aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=10 Tax=Clostridium difficile RepID=G6B3Q5_CLODI
ipk; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
L3_129_030G1_scaffold_464_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12684..13400
DNA (717bp) protein (239aa)
FCD domain protein n=3 Tax=Clostridium difficile RepID=G6B3Q4_CLODI
FCD domain protein {ECO:0000313|EMBL:EHJ33735.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
GntR family transcriptional regulator
L3_129_030G1_scaffold_464_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13545..14204
DNA (660bp) protein (220aa)
Stage II sporulation protein n=211 Tax=Clostridium difficile RepID=C9XSG8_CLODC
stage II sporulation protein
Pro-sigma(E) endopeptidase (Stage II sporulation) {ECO:0000313|EMBL:CAJ70470.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_129_030G1_scaffold_464_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14234..14740
DNA (507bp) protein (169aa)
Cell Wall Hydrolase n=10 Tax=Clostridium difficile RepID=G6B3Q2_CLODI
Cell Wall Hydrolase {ECO:0000313|EMBL:EHJ33733.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
spore cortex-lytic enzyme
L3_129_030G1_scaffold_464_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14942..15748
DNA (807bp) protein (269aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
Glutamate racemase n=201 Tax=Clostridium difficile RepID=C9XSG6_CLODC
glutamate racemase
L3_129_030G1_scaffold_464_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15765..16193
DNA (429bp) protein (143aa)
Uncharacterized protein n=5 Tax=Clostridium difficile RepID=G6B3Q0_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ33731.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
hypothetical protein
L3_129_030G1_scaffold_464_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16376..17764
DNA (1389bp) protein (463aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
tRNA(Ile)-lysidine synthase n=7 Tax=Clostridium difficile RepID=G6B3P9_CLODI
ATPase
L3_129_030G1_scaffold_464_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17774..19768
DNA (1995bp) protein (665aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
ATP-dependent zinc metalloprotease FtsH n=2 Tax=Clostridium difficile RepID=G6B3P8_CLODI
ftsH2; cell division protein
L3_129_030G1_scaffold_464_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20083..21060
DNA (978bp) protein (326aa)
birA; bifunctional biotin operon repressor/biotin--[acetyl-CoA-carboxylase] synthetase (EC:6.3.4.15)
Biotin--[acetyl-CoA-carboxylase] ligase n=1 Tax=Clostridium difficile CD22 RepID=T2V8V8_CLODI
Bifunctional ligase/repressor BirA {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--[acetyl-CoA-carboxylase] ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--protein ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin-[acetyl-CoA carboxylase] synthetase {ECO:0000256|HAMAP-Rule:MF_00978}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L3_129_030G1_scaffold_464_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21053..22021
DNA (969bp) protein (323aa)
Peptidase S58 family protein n=1 Tax=Clostridium difficile CD22 RepID=T2V6K7_CLODI
Peptidase family T4 {ECO:0000313|EMBL:EHJ26629.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
peptidase
L3_129_030G1_scaffold_464_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22207..22794
DNA (588bp) protein (196aa)
Uncharacterized protein n=1 Tax=Clostridium difficile P41 RepID=U4WUW0_CLODI
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:CCL24023.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_129_030G1_scaffold_464_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22813..23583
DNA (771bp) protein (257aa)
Type III pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_01274};; PanK-III {ECO:0000256|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_01274}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
Type III pantothenate kinase n=199 Tax=Clostridium difficile RepID=C9XSF9_CLODC
pantothenate kinase
L3_129_030G1_scaffold_464_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23720..24688
DNA (969bp) protein (323aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
tRNA-dihydrouridine synthase n=1 Tax=Clostridium difficile CD22 RepID=T2V731_CLODI
dusB; tRNA-dihydrouridine synthase
L3_129_030G1_scaffold_464_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24797..25276
DNA (480bp) protein (160aa)
Transcription elongation factor GreA n=215 Tax=Clostridium difficile RepID=GREA_CLOD6
greA; transcription elongation factor GreA
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=1225722 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E1.;"
L3_129_030G1_scaffold_464_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25291..26820
DNA (1530bp) protein (510aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
Lysine--tRNA ligase n=165 Tax=Clostridium difficile RepID=C9XSF6_CLODC
lysS; lysyl-tRNA synthetase
L3_129_030G1_scaffold_464_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27042..27323
DNA (282bp) protein (94aa)
Uncharacterized protein n=175 Tax=Clostridium difficile RepID=Q181F3_CLOD6
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EHJ26635.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
Displaying 29 items

View Taxonomy