ggKbase home page

L3_129_030G1_scaffold_468

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_129_030G1_scaffold_468_1
[Clostridium] stercorarium, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1..1212
DNA (1212bp) protein (404aa)
Restriction endonuclease S subunit n=3 Tax=Lactobacillus gasseri RepID=Q043T4_LACGA
restriction endonuclease S subunit
Type-1 restriction enzyme EcoKI specificity protein HsdS {ECO:0000313|EMBL:AGC67469.1}; TaxID=1121335 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM; 8532 / NCIMB 11754).;"
L3_129_030G1_scaffold_468_2
Lactobacillus hominis, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

1205..3571
DNA (2367bp) protein (789aa)
Helicase C-terminal domain protein n=1 Tax=Lactobacillus gasseri 202-4 RepID=C4VTK8_9LACO
Type I site-specific restriction-modification system, R (restriction) subunit related helicase
Type I site-specific restriction-modification system, R (Restriction) subunit related helicase {ECO:0000313|EMBL:CCI80989.1}; TaxID=1423758 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus hominis DSM 23910 = CRBIP 24.179.;"
L3_129_030G1_scaffold_468_3
Lactobacillus hominis, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

3535..4404
DNA (870bp) protein (290aa)
Type I restriction-modification system, R subunit n=1 Tax=Lactobacillus gasseri CECT 5714 RepID=J2ZPH4_9LACO
Type I site-specific restriction-modification system, R (restriction) subunit related helicase
Type I site-specific restriction-modification system, R (Restriction) subunit related helicase {ECO:0000313|EMBL:CCI80989.1}; TaxID=1423758 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus hominis DSM 23910 = CRBIP 24.179.;"
L3_129_030G1_scaffold_468_4
Lactobacillus amylovorus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

4444..6513
DNA (2070bp) protein (690aa)
Uncharacterized protein n=5 Tax=Lactobacillus gasseri RepID=E3RAL4_9LACO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA32347.1}; TaxID=695562 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus amylovorus (strain GRL 1118).;"
L3_129_030G1_scaffold_468_5
Lactobacillus gasseri, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

6673..8484
DNA (1812bp) protein (604aa)
Succinate dehydrogenase/fumarate reductase, flavoprotein subunit n=5 Tax=Lactobacillus gasseri RepID=Q043S9_LACGA
succinate dehydrogenase/fumarate reductase, flavoprotein subunit
FAD binding domain protein {ECO:0000313|EMBL:EFB62426.1}; TaxID=679196 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus gasseri 224-1.;"
L3_129_030G1_scaffold_468_6
Lactobacillus gasseri, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

8853..9542
DNA (690bp) protein (230aa)
Uncharacterized protein n=6 Tax=Lactobacillus gasseri RepID=C4VR96_9LACO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFL97498.1}; TaxID=575604 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus gasseri SV-16A-US.;"
L3_129_030G1_scaffold_468_7
Lactobacillus gasseri, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

9810..10385
DNA (576bp) protein (192aa)
Uncharacterized protein n=5 Tax=Lactobacillus gasseri RepID=C4VR95_9LACO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFL97499.1}; TaxID=575604 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus gasseri SV-16A-US.;"
L3_129_030G1_scaffold_468_8
Lactobacillus gasseri, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(10411..11301)
DNA (891bp) protein (297aa)
Uncharacterized protein n=5 Tax=Lactobacillus gasseri RepID=C4VR94_9LACO
hypothetical protein
YitT family protein {ECO:0000313|EMBL:KFL97500.1}; TaxID=575604 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus gasseri SV-16A-US.;"
L3_129_030G1_scaffold_468_9
Lactobacillus gasseri, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

11357..12553
DNA (1197bp) protein (399aa)
CCA-adding enzyme {ECO:0000256|HAMAP-Rule:MF_01263, ECO:0000256|SAAS:SAAS00014818}; EC=2.7.7.72 {ECO:0000256|HAMAP-Rule:MF_01263, ECO:0000256|SAAS:SAAS00014831};; CCA tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01263}; tRNA CCA-pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_01263}; tRNA adenylyl-/cytidylyl- transferase {ECO:0000256|HAMAP-Rule:MF_01263}; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01263}; tRNA-NT {ECO:0000256|HAMAP-Rule:MF_01263}; TaxID=679196 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus gasseri 224-1.;"
CCA-adding enzyme n=6 Tax=Lactobacillus gasseri RepID=CCA_LACGA
tRNA CCA-pyrophosphorylase
L3_129_030G1_scaffold_468_10
Lactobacillus gasseri, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(12607..13272)
DNA (666bp) protein (222aa)
Channel protein, hemolysin III family n=2 Tax=Lactobacillus gasseri RepID=C4VR92_9LACO
hemolysin III
Hemolysin III {ECO:0000313|EMBL:AJC07832.1}; TaxID=1403312 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus gasseri 130918.;"
L3_129_030G1_scaffold_468_11
Lactobacillus gasseri, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

13414..14271
DNA (858bp) protein (286aa)
EDD domain protein, DegV family n=1 Tax=Lactobacillus gasseri 202-4 RepID=C4VR91_9LACO
hypothetical protein
Putative family protein {ECO:0000313|EMBL:KFL97503.1}; TaxID=575604 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus gasseri SV-16A-US.;"
L3_129_030G1_scaffold_468_12
Lactobacillus gasseri, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

14271..14498
DNA (228bp) protein (76aa)
UPF0346 protein HMPREF0890_0882 n=2 Tax=Lactobacillus gasseri RepID=C4VR90_9LACO
hypothetical protein
UPF0346 protein P906_04310 {ECO:0000256|HAMAP-Rule:MF_01538}; TaxID=1403312 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus gasseri 130918.;"
L3_129_030G1_scaffold_468_13
Lactobacillus gasseri, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

14506..15954
DNA (1449bp) protein (483aa)
Peptidase, S41 family n=1 Tax=Lactobacillus gasseri 202-4 RepID=C4VR89_9LACO
periplasmic protease
Carboxy-processing proteinase {ECO:0000313|EMBL:KFL97505.1}; TaxID=575604 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus gasseri SV-16A-US.;"
L3_129_030G1_scaffold_468_14
Lactobacillus gasseri, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

15957..16796
DNA (840bp) protein (280aa)
Ribosome biogenesis GTPase A n=6 Tax=Lactobacillus gasseri RepID=Q043S0_LACGA
GTPase
Ribosome biogenesis GTPase A {ECO:0000256|PIRNR:PIRNR006230}; TaxID=679196 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus gasseri 224-1.;"
L3_129_030G1_scaffold_468_15
Lactobacillus gasseri, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

16793..17545
DNA (753bp) protein (251aa)
Ribonuclease HII {ECO:0000255|HAMAP-Rule:MF_00052}; Short=RNase HII {ECO:0000255|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000255|HAMAP-Rule:MF_00052};; TaxID=324831 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus gasseri (strain ATCC 33323 / DSM 20243 / JCM 1131 /; NCIMB 11718 / AM63).;"
Ribonuclease HII n=4 Tax=Lactobacillus gasseri RepID=RNH2_LACGA
rnhB; ribonuclease HII
L3_129_030G1_scaffold_468_16
Lactobacillus gasseri, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

17597..18442
DNA (846bp) protein (282aa)
DNA protecting protein DprA n=1 Tax=Lactobacillus gasseri 202-4 RepID=C4VR86_9LACO
Rossmann fold nucleotide-binding protein for DNA uptake
DNA protecting protein DprA {ECO:0000313|EMBL:EFB62415.1}; TaxID=679196 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus gasseri 224-1.;"
L3_129_030G1_scaffold_468_17
Lactobacillus gasseri, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

18508..20589
DNA (2082bp) protein (694aa)
DNA topoisomerase I (EC:5.99.1.2)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=575604 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus gasseri SV-16A-US.;"
DNA topoisomerase 1 n=1 Tax=Lactobacillus gasseri 202-4 RepID=C4VR85_9LACO
L3_129_030G1_scaffold_468_18
Lactobacillus gasseri, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

20687..22003
DNA (1317bp) protein (439aa)
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO {ECO:0000256|HAMAP-Rule:MF_01037, ECO:0000256|SAAS:SAAS00089752}; EC=2.1.1.74 {ECO:0000256|HAMAP-Rule:MF_01037, ECO:0000256|SAAS:SAAS00089759};; Folate-dependent tRNA (uracil-5-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01037}; Folate-dependent tRNA(M-5-U54)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01037}; TaxID=575604 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus gasseri SV-16A-US.;"
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO n=1 Tax=Lactobacillus gasseri 202-4 RepID=C4VR84_9LACO
gid; tRNA (uracil-5-)-methyltransferase Gid
L3_129_030G1_scaffold_468_19
Lactobacillus gasseri, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

22006..22929
DNA (924bp) protein (308aa)
Tyrosine recombinase XerC n=1 Tax=Lactobacillus gasseri 202-4 RepID=C4VR83_9LACO
integrase
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=679196 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus gasseri 224-1.;"
L3_129_030G1_scaffold_468_20
Lactobacillus gasseri, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

22934..23458
DNA (525bp) protein (175aa)
ATP-dependent protease subunit HslV {ECO:0000256|SAAS:SAAS00019556}; EC=3.4.25.2 {ECO:0000256|SAAS:SAAS00019493};; TaxID=1403312 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus gasseri 130918.;"
ATP-dependent protease HslVU (ClpYQ), peptidase subunit n=7 Tax=Lactobacillus gasseri RepID=Q043R4_LACGA
ATP-dependent protease
L3_129_030G1_scaffold_468_21
Lactobacillus gasseri, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

23469..24863
DNA (1395bp) protein (465aa)
ATP-dependent protease ATPase subunit HslU n=6 Tax=Lactobacillus gasseri RepID=HSLU_LACGA
hslU; ATP-dependent protease ATP-binding subunit HslU
ATP-dependent protease ATPase subunit HslU {ECO:0000255|HAMAP-Rule:MF_00249}; Unfoldase HslU {ECO:0000255|HAMAP-Rule:MF_00249}; TaxID=324831 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus gasseri (strain ATCC 33323 / DSM 20243 / JCM 1131 /; NCIMB 11718 / AM63).;"
L3_129_030G1_scaffold_468_22
Lactobacillus gasseri, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

24891..25778
DNA (888bp) protein (296aa)
Aldose 1-epimerase n=1 Tax=Lactobacillus gasseri 202-4 RepID=C4VR80_9LACO
galactose mutarotase-like protein
Aldose 1-epimerase {ECO:0000313|EMBL:AJC07844.1}; TaxID=1403312 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus gasseri 130918.;"
L3_129_030G1_scaffold_468_23
Lactobacillus gasseri, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

25837..26439
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Lactobacillus gasseri 202-4 RepID=C4VR79_9LACO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFL97515.1}; TaxID=575604 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus gasseri SV-16A-US.;"
L3_129_030G1_scaffold_468_24
Lactobacillus gasseri, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

26598..27104
DNA (507bp) protein (169aa)
Putative membrane-bound metal-dependent hydrolase n=1 Tax=Lactobacillus gasseri 202-4 RepID=C4VR78_9LACO
membrane-bound metal-dependent hydrolase
Uncharacterized protein {ECO:0000313|EMBL:KFL97516.1}; TaxID=575604 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus gasseri SV-16A-US.;"
Displaying 24 items

View Taxonomy