ggKbase home page

L3_129_030G1_scaffold_789

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_129_030G1_scaffold_789_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..561)
DNA (561bp) protein (187aa)
Uncharacterized protein n=7 Tax=Clostridium difficile RepID=G6B8K1_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ27330.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
hypothetical protein
L3_129_030G1_scaffold_789_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

946..1680
DNA (735bp) protein (245aa)
Methyltransferase domain protein n=8 Tax=Clostridium difficile RepID=G6B8K2_CLODI
Methyltransferase domain protein {ECO:0000313|EMBL:EHJ29593.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
hypothetical protein
L3_129_030G1_scaffold_789_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1823..2314)
DNA (492bp) protein (164aa)
YbaK/proline--tRNA ligase associated domain protein n=15 Tax=Clostridium difficile RepID=D5Q4I1_CLODI
Putative oligonucleotide binding regulator {ECO:0000313|EMBL:CCK90581.1}; TaxID=1215060 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T20.;"
regulatory protein
L3_129_030G1_scaffold_789_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2663..3046
DNA (384bp) protein (128aa)
Uncharacterized protein n=162 Tax=Clostridium difficile RepID=T3GLA1_CLODC
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQG76752.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_129_030G1_scaffold_789_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3552..3935
DNA (384bp) protein (128aa)
Uncharacterized protein n=167 Tax=Clostridium difficile RepID=Q187K4_CLOD6
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:CDS87099.1}; Uncharacterized protein {ECO:0000313|EMBL:CDS87782.1}; YtxH-like protein {ECO:0000313|EMBL:CKH15600.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_129_030G1_scaffold_789_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3937..4287
DNA (351bp) protein (117aa)
Uncharacterized protein n=156 Tax=Clostridium difficile RepID=Q187K8_CLOD6
lipoprotein
Uncharacterized protein {ECO:0000313|EMBL:CCL30099.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_129_030G1_scaffold_789_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4381..4839)
DNA (459bp) protein (153aa)
Uncharacterized protein n=8 Tax=Clostridium difficile RepID=G6B8K7_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ27324.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
hypothetical protein
L3_129_030G1_scaffold_789_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4884..5672)
DNA (789bp) protein (263aa)
N-acetylmuramoyl-L-alanine amidase n=8 Tax=Clostridium difficile RepID=G6B8K8_CLODI
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:EHJ27323.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
phage-related cell wall hydrolase (endolysin)
L3_129_030G1_scaffold_789_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5811..6248)
DNA (438bp) protein (146aa)
putative dCMP deaminase (EC:3.5.4.12)
Cytidine and deoxycytidylate deaminase zinc-binding region family protein n=51 Tax=Clostridium difficile RepID=T3GRF5_CLODC
Cytidine and deoxycytidylate deaminase zinc-binding region family protein {ECO:0000313|EMBL:EQH99537.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
L3_129_030G1_scaffold_789_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6483..6686)
DNA (204bp) protein (68aa)
Uncharacterized protein n=211 Tax=Clostridium difficile RepID=C9XJC9_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFH07165.1}; TaxID=525259 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile NAP08.;"
L3_129_030G1_scaffold_789_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7084..7383
DNA (300bp) protein (100aa)
Uncharacterized protein n=8 Tax=Clostridium difficile RepID=G6B8L1_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ27320.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
transposase
L3_129_030G1_scaffold_789_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7660..8169
DNA (510bp) protein (170aa)
DNA-binding helix-turn-helix protein n=8 Tax=Clostridium difficile RepID=G6B8L2_CLODI
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EHJ27319.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
phage repressor
L3_129_030G1_scaffold_789_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8557..9093
DNA (537bp) protein (179aa)
Uncharacterized protein n=7 Tax=Clostridium difficile RepID=G6B8L3_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ27318.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
putative lipoprotein signal peptidase
L3_129_030G1_scaffold_789_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9530..10330)
DNA (801bp) protein (267aa)
Binding--dependent transport system inner membrane component family protein n=1 Tax=Clostridium difficile CD69 RepID=T3A3D5_CLODI
ABC transporter permease
Binding--dependent transport system inner membrane component family protein {ECO:0000313|EMBL:EQE64612.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_129_030G1_scaffold_789_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10320..10502)
DNA (183bp) protein (61aa)
ABC transporter family protein n=1 Tax=Clostridium difficile P73 RepID=T4UI54_CLODI
Putative ABC transporter component,ATP-binding {ECO:0000313|EMBL:CCK98266.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
ABC transporter ATP-binding protein
Displaying 15 items

View Taxonomy