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L3_129_030G1_scaffold_230

Search features with annotation key words

Displaying items 1-30 of 75 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_129_030G1_scaffold_230_1
Firmicutes bacterium CAG:791, Firmicutes, Bacteria

Not on your lists

comp(81..830)
DNA (750bp) protein (250aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:791 RepID=R5CJC3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX66589.1}; TaxID=1262993 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:791.;"
hypothetical protein
L3_129_030G1_scaffold_230_2
Firmicutes bacterium CAG:791, Firmicutes, Bacteria

Not on your lists

comp(814..1773)
DNA (960bp) protein (320aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:791 RepID=R5CFY9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX66588.1}; TaxID=1262993 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:791.;"
hypothetical protein
L3_129_030G1_scaffold_230_3
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2054..2368
DNA (315bp) protein (105aa)
Recombinase n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PEP1_9FIRM
Recombinase {ECO:0000313|EMBL:EDS09824.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
hypothetical protein
L3_129_030G1_scaffold_230_4
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(2750..3142)
DNA (393bp) protein (131aa)
30S ribosomal protein S9 n=1 Tax=Clostridium sp. CAG:81 RepID=R5FV02_9CLOT
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
SSU ribosomal protein S9P
L3_129_030G1_scaffold_230_5
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(3169..3603)
DNA (435bp) protein (145aa)
50S ribosomal protein L13 n=1 Tax=Clostridium sp. CAG:58 RepID=R6S4I2_9CLOT
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|RuleBase:RU003878}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
LSU ribosomal protein L13P
L3_129_030G1_scaffold_230_6
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3783..4610)
DNA (828bp) protein (276aa)
UPF0317 protein BN719_00354 n=1 Tax=Clostridium sp. CAG:58 RepID=R6RRC6_9CLOT
UPF0317 protein BN719_00354 {ECO:0000256|HAMAP-Rule:MF_01830}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
hypothetical protein
L3_129_030G1_scaffold_230_7
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4622..5719)
DNA (1098bp) protein (366aa)
Biotin-dependent carboxylase uncharacterized domain n=1 Tax=Clostridium sp. CAG:58 RepID=R6RY02_9CLOT
Biotin-dependent carboxylase uncharacterized domain {ECO:0000313|EMBL:CDC50249.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
biotin-dependent carboxylase uncharacterized domain
L3_129_030G1_scaffold_230_8
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5719..6450)
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:58 RepID=R6RMV0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC50248.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
conserved hypothetical protein TIGR00370
L3_129_030G1_scaffold_230_9
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6523..7287)
DNA (765bp) protein (255aa)
UPF0271 protein BN719_00351 n=1 Tax=Clostridium sp. CAG:58 RepID=R6SUG8_9CLOT
UPF0271 protein BN719_00351 {ECO:0000256|HAMAP-Rule:MF_00691}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
Uncharacterized proteins, homologs of lactam utilization protein B
L3_129_030G1_scaffold_230_10
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7375..8406)
DNA (1032bp) protein (344aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
pseudouridylate synthase I (EC:5.4.99.12)
tRNA pseudouridine synthase A n=1 Tax=Clostridium sp. CAG:58 RepID=R6S4H7_9CLOT
L3_129_030G1_scaffold_230_11
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8449..9249)
DNA (801bp) protein (267aa)
ABC-type cobalt transport system permease component CbiQ and related transporters n=1 Tax=Clostridium sp. CAG:58 RepID=R6RRC2_9CLOT
ABC-type cobalt transport system permease component CbiQ and related transporters {ECO:0000313|EMBL:CDC50245.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
ABC-type cobalt transport system, permease component CbiQ and related transporters
L3_129_030G1_scaffold_230_12
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9243..10130)
DNA (888bp) protein (296aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
ABC-type cobalt transport system ATPase component n=1 Tax=Clostridium sp. CAG:58 RepID=R6RXZ8_9CLOT
ABC-type cobalt transport system, ATPase component
L3_129_030G1_scaffold_230_13
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10131..10997)
DNA (867bp) protein (289aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
ABC-type cobalt transport system ATPase component n=1 Tax=Clostridium sp. CAG:58 RepID=R6RMU6_9CLOT
ABC-type cobalt transport system, ATPase component
L3_129_030G1_scaffold_230_14
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11286..12338)
DNA (1053bp) protein (351aa)
Putative cell wall binding repeat n=1 Tax=Clostridium sp. CAG:58 RepID=R6SUG3_9CLOT
Putative cell wall binding repeat {ECO:0000313|EMBL:CDC50242.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
Putative cell wall binding repeat.
L3_129_030G1_scaffold_230_15
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12357..13622)
DNA (1266bp) protein (422aa)
Putative cell wall binding repeat n=1 Tax=Clostridium sp. CAG:58 RepID=R6S4H3_9CLOT
Putative cell wall binding repeat {ECO:0000313|EMBL:CDC50241.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
Putative cell wall binding repeat.
L3_129_030G1_scaffold_230_16
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(13824..14360)
DNA (537bp) protein (179aa)
50S ribosomal protein L17 n=1 Tax=Clostridium sp. CAG:58 RepID=R6RRB7_9CLOT
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
50S ribosomal protein L17
L3_129_030G1_scaffold_230_17
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14496..15458)
DNA (963bp) protein (321aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
DNA-directed RNA polymerase subunit alpha n=1 Tax=Clostridium sp. CAG:58 RepID=R6RXZ3_9CLOT
DNA-directed RNA polymerase subunit alpha
L3_129_030G1_scaffold_230_18
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(15618..16211)
DNA (594bp) protein (198aa)
30S ribosomal protein S4 n=1 Tax=Clostridium sp. CAG:58 RepID=R6RL59_9CLOT
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
SSU ribosomal protein S4P
L3_129_030G1_scaffold_230_19
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(16227..16628)
DNA (402bp) protein (134aa)
30S ribosomal protein S11 n=1 Tax=Clostridium sp. CAG:58 RepID=R6RSH9_9CLOT
SSU ribosomal protein S11P
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
L3_129_030G1_scaffold_230_20
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(16720..17088)
DNA (369bp) protein (123aa)
30S ribosomal protein S13 n=1 Tax=Clostridium sp. CAG:58 RepID=R6RAU4_9CLOT
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
30S ribosomal protein S13
L3_129_030G1_scaffold_230_21
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17519..17737)
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=3 Tax=Clostridiales RepID=D7GUS2_9FIRM
translation initiation factor IF-1
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075, ECO:0000313|EMBL:CBL41564.1}; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
L3_129_030G1_scaffold_230_22
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17771..17932)
DNA (162bp) protein (54aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:58 RepID=R6RAU9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC46023.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
hypothetical protein
L3_129_030G1_scaffold_230_23
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17956..18705)
DNA (750bp) protein (250aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
methionine aminopeptidase, type I (EC:3.4.11.18)
Methionine aminopeptidase n=1 Tax=Clostridium sp. CAG:58 RepID=R6RSI9_9CLOT
L3_129_030G1_scaffold_230_24
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18710..19354)
DNA (645bp) protein (215aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
Adenylate kinase (EC:2.7.4.3)
Adenylate kinase n=1 Tax=Clostridium sp. CAG:58 RepID=R6RL70_9CLOT
L3_129_030G1_scaffold_230_25
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(19466..20788)
DNA (1323bp) protein (441aa)
Protein translocase subunit SecY n=1 Tax=Clostridium sp. CAG:58 RepID=R6RSJ4_9CLOT
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
protein translocase subunit secY/sec61 alpha
L3_129_030G1_scaffold_230_26
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(20790..21230)
DNA (441bp) protein (147aa)
50S ribosomal protein L15 n=1 Tax=Clostridium sp. CAG:58 RepID=R6RL75_9CLOT
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
LSU ribosomal protein L15P
L3_129_030G1_scaffold_230_27
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(21259..21441)
DNA (183bp) protein (61aa)
50S ribosomal protein L30 n=1 Tax=Clostridium sp. CAG:58 RepID=R6RSJ8_9CLOT
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
LSU ribosomal protein L30P
L3_129_030G1_scaffold_230_28
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(21457..21966)
DNA (510bp) protein (170aa)
30S ribosomal protein S5 n=1 Tax=Clostridium sp. CAG:58 RepID=R6RL78_9CLOT
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
SSU ribosomal protein S5P
L3_129_030G1_scaffold_230_29
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(21985..22353)
DNA (369bp) protein (123aa)
50S ribosomal protein L18 n=1 Tax=Clostridium sp. CAG:58 RepID=R6SHG8_9CLOT
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
LSU ribosomal protein L18P
L3_129_030G1_scaffold_230_30
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(22372..22911)
DNA (540bp) protein (180aa)
50S ribosomal protein L6 n=1 Tax=Clostridium sp. CAG:58 RepID=R6RL80_9CLOT
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
LSU ribosomal protein L6P
Displaying items 1-30 of 75 in total

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