ggKbase home page

L3_129_062G1_scaffold_8

Search features with annotation key words

Displaying items 1-30 of 325 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_129_062G1_scaffold_8_1
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(236..1684)
DNA (1449bp) protein (483aa)
Bacillus/Clostridium GerA spore germination protein n=1 Tax=Clostridium sp. CAG:81 RepID=R5FY52_9CLOT
Bacillus/Clostridium GerA spore germination protein {ECO:0000313|EMBL:CCY09798.1}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
Bacillus/Clostridium GerA spore germination protein.
L3_129_062G1_scaffold_8_2
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1976..2698)
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:58 RepID=R6RLG2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC48565.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1
L3_129_062G1_scaffold_8_3
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2876..4810
DNA (1935bp) protein (645aa)
NAD+ synthetase (EC:6.3.5.1)
NAD+ synthetase n=1 Tax=Clostridium sp. CAG:58 RepID=R6RI64_9CLOT
NAD+ synthetase {ECO:0000313|EMBL:CDC48563.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
L3_129_062G1_scaffold_8_4
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4807..5604
DNA (798bp) protein (266aa)
rRNA methylases n=1 Tax=Clostridium sp. CAG:58 RepID=R6RZT1_9CLOT
rRNA methylases {ECO:0000313|EMBL:CDC48556.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
rRNA methylases
L3_129_062G1_scaffold_8_5
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5618..6058
DNA (441bp) protein (147aa)
Membrane protein implicated in regulation of membrane protease activity n=1 Tax=Clostridium sp. CAG:58 RepID=R6RTD4_9CLOT
Membrane protein implicated in regulation of membrane protease activity {ECO:0000313|EMBL:CDC48554.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
hypothetical protein
L3_129_062G1_scaffold_8_6
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6060..7007
DNA (948bp) protein (316aa)
Membrane protease subunits stomatin/prohibitin homologs n=1 Tax=Clostridium sp. CAG:58 RepID=R6SPP0_9CLOT
Membrane protease subunits stomatin/prohibitin homologs {ECO:0000313|EMBL:CDC48552.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
Membrane protease subunits, stomatin/prohibitin homologs
L3_129_062G1_scaffold_8_7
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7004..8137
DNA (1134bp) protein (378aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:81 RepID=R5G1Q5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY09819.1}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
patatin
L3_129_062G1_scaffold_8_8
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8148..8456
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:58 RepID=R6RLE4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC48545.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
hypothetical protein
L3_129_062G1_scaffold_8_9
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8460..9440
DNA (981bp) protein (327aa)
birA, biotin-[acetyl-CoA-carboxylase] ligase region (EC:6.3.4.15)
BirA biotin-[acetyl-CoA-carboxylase] ligase region n=1 Tax=Clostridium sp. CAG:58 RepID=R6RI49_9CLOT
Bifunctional ligase/repressor BirA {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--[acetyl-CoA-carboxylase] ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--protein ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin-[acetyl-CoA carboxylase] synthetase {ECO:0000256|HAMAP-Rule:MF_00978}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
L3_129_062G1_scaffold_8_10
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9433..10572
DNA (1140bp) protein (380aa)
A/G-specific adenine glycosylase n=1 Tax=Clostridium sp. CAG:58 RepID=R6RZR9_9CLOT
A/G-specific adenine glycosylase {ECO:0000313|EMBL:CDC48541.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
A/G-specific adenine glycosylase
L3_129_062G1_scaffold_8_11
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10569..11474
DNA (906bp) protein (302aa)
Putative uncharacterized protein n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GP95_9FIRM
conserved protein of unknown function cotranscribed with Bmr (bmrU)
Uncharacterized protein {ECO:0000313|EMBL:CBL42630.1}; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
L3_129_062G1_scaffold_8_12
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11562..12689
DNA (1128bp) protein (376aa)
RNA polymerase sigma factor SigA n=1 Tax=Clostridium sp. CAG:58 RepID=R6RCN1_9CLOT
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
RpoD subfamily RNA polymerase sigma-70 subunit
L3_129_062G1_scaffold_8_13
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12755..13375
DNA (621bp) protein (207aa)
Uncharacterized protein conserved in bacteria n=1 Tax=Clostridium sp. CAG:58 RepID=R6SG48_9CLOT
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CDC45592.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
hypothetical protein
L3_129_062G1_scaffold_8_14
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13436..13699
DNA (264bp) protein (88aa)
Phosphotransferase System HPr (HPr) Family n=1 Tax=Clostridium sp. CAG:58 RepID=R6RCM7_9CLOT
Phosphotransferase System HPr (HPr) Family {ECO:0000313|EMBL:CDC45590.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
Phosphotransferase System HPr (HPr) Family
L3_129_062G1_scaffold_8_15
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13733..14575
DNA (843bp) protein (281aa)
ATPases involved in chromosome partitioning n=1 Tax=Clostridium sp. CAG:58 RepID=R6R9L0_9CLOT
ATPases involved in chromosome partitioning {ECO:0000313|EMBL:CDC45588.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
ATPases involved in chromosome partitioning
L3_129_062G1_scaffold_8_16
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14603..15790
DNA (1188bp) protein (396aa)
Putative membrane associated lipase alpha/beta hydrolase family n=1 Tax=Clostridium sp. CAG:58 RepID=R6RCL7_9CLOT
Putative membrane associated lipase alpha/beta hydrolase family {ECO:0000313|EMBL:CDC45580.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
serine esterase
L3_129_062G1_scaffold_8_17
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15824..17839)
DNA (2016bp) protein (672aa)
ATPase components of ABC transporters with duplicated ATPase domains n=1 Tax=Clostridium sp. CAG:58 RepID=R6RJW8_9CLOT
ATPase components of ABC transporters with duplicated ATPase domains {ECO:0000313|EMBL:CDC45579.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
ATPase components of ABC transporters with duplicated ATPase domains
L3_129_062G1_scaffold_8_18
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18143..18739
DNA (597bp) protein (199aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:58 RepID=R6SG34_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC45577.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
L3_129_062G1_scaffold_8_19
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18881..19549
DNA (669bp) protein (223aa)
Redox-sensing transcriptional repressor Rex n=1 Tax=Clostridium sp. CAG:58 RepID=R6RKF4_9CLOT
Redox-sensing transcriptional repressor Rex {ECO:0000256|HAMAP-Rule:MF_01131}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
AT-rich DNA-binding protein
L3_129_062G1_scaffold_8_20
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19546..19908
DNA (363bp) protein (121aa)
Holo-[acyl-carrier-protein] synthase {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00071085}; Short=Holo-ACP synthase {ECO:0000256|HAMAP-Rule:MF_00101};; EC=2.7.8.7 {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00071082};; 4'-phosphopantetheinyl transferase AcpS {ECO:0000256|HAMAP-Rule:MF_00101}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
phosphopantethiene--protein transferase domain (EC:2.7.8.7)
Holo-[acyl-carrier-protein] synthase n=1 Tax=Clostridium sp. CAG:58 RepID=R6RVI6_9CLOT
L3_129_062G1_scaffold_8_21
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19913..21508
DNA (1596bp) protein (532aa)
YjeF C-terminal region hydroxyethylthiazole kinase-related/yjeF N-terminal region n=1 Tax=Clostridium sp. CAG:81 RepID=R5FYB2_9CLOT
yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region
YjeF C-terminal region hydroxyethylthiazole kinase-related/yjeF N-terminal region {ECO:0000313|EMBL:CCY09858.1}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
L3_129_062G1_scaffold_8_22
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21501..22649
DNA (1149bp) protein (383aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247};; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
alanine racemase (EC:5.1.1.1)
Alanine racemase n=1 Tax=Clostridium sp. CAG:58 RepID=R6SSB1_9CLOT
L3_129_062G1_scaffold_8_23
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22803..23150
DNA (348bp) protein (116aa)
mRNA interferase {ECO:0000256|PIRNR:PIRNR033490}; EC=3.1.-.- {ECO:0000256|PIRNR:PIRNR033490};; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
mRNA interferase n=1 Tax=Clostridium sp. CAG:58 RepID=R6RKT4_9CLOT
transcriptional modulator of MazE/toxin MazF
L3_129_062G1_scaffold_8_24
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23241..24602
DNA (1362bp) protein (454aa)
Hemolysins and related proteins containing CBS domains n=1 Tax=Clostridium sp. CAG:58 RepID=R6RVX6_9CLOT
Hemolysins and related proteins containing CBS domains {ECO:0000313|EMBL:CDC49494.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
Hemolysins and related proteins containing CBS domains
L3_129_062G1_scaffold_8_25
Erysipelotrichaceae bacterium 5_2_54FAA, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(24666..26600)
DNA (1935bp) protein (645aa)
Uncharacterized protein n=1 Tax=Erysipelotrichaceae bacterium 5_2_54FAA RepID=U5F6U8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFE46197.1}; TaxID=552396 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 5_2_54FAA.;"
acylamino-acid-releasing enzyme
L3_129_062G1_scaffold_8_26
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26865..27593
DNA (729bp) protein (243aa)
Probable transcriptional regulatory protein BN719_02115 n=1 Tax=Clostridium sp. CAG:58 RepID=R6S2I4_9CLOT
Probable transcriptional regulatory protein BN719_02115 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
conserved hypothetical protein TIGR01033
L3_129_062G1_scaffold_8_27
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27676..28152
DNA (477bp) protein (159aa)
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase {ECO:0000256|PIRNR:PIRNR006181}; EC=4.2.-.- {ECO:0000256|PIRNR:PIRNR006181};; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase n=1 Tax=Clostridium sp. CAG:58 RepID=R6SSD9_9CLOT
ybaK/ebsC protein
L3_129_062G1_scaffold_8_28
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28371..29387
DNA (1017bp) protein (339aa)
Cell Wall Hydrolase n=1 Tax=Clostridium sp. CAG:58 RepID=R6RKW4_9CLOT
Cell Wall Hydrolase {ECO:0000313|EMBL:CDC49498.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
Cell Wall Hydrolase.
L3_129_062G1_scaffold_8_29
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29548..31245
DNA (1698bp) protein (566aa)
Phosphoenolpyruvate carboxykinase (ATP) {ECO:0000256|SAAS:SAAS00051801}; EC=4.1.1.49 {ECO:0000256|SAAS:SAAS00051801};; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
Phosphoenolpyruvate carboxykinase (ATP) (EC:4.1.1.49)
Uncharacterized protein n=4 Tax=Clostridium RepID=E9SM07_CLOSY
L3_129_062G1_scaffold_8_30
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31323..31985
DNA (663bp) protein (221aa)
haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E (EC:3.1.3.18)
Haloacid dehalogenase superfamily subfamily IA variant 1 with third motif having Dx(3-4)D or Dx(3-4)E n=1 Tax=Clostridium sp. CAG:58 RepID=R6RW07_9CLOT
Haloacid dehalogenase superfamily subfamily IA variant 1 with third motif having Dx(3-4)D or Dx(3-4)E {ECO:0000313|EMBL:CDC49499.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
Displaying items 1-30 of 325 in total

View Taxonomy