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L3_129_062G1_scaffold_28

Search features with annotation key words

Displaying items 1-30 of 209 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_129_062G1_scaffold_28_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..606)
DNA (606bp) protein (202aa)
diaminopropionate ammonia-lyase (EC:4.3.1.15)
Diaminopropionate ammonia-lyase family protein n=1 Tax=Clostridium difficile CD211 RepID=T3HPP3_CLODI
Diaminopropionate ammonia-lyase {ECO:0000313|EMBL:CBE04967.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_129_062G1_scaffold_28_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(969..1640)
DNA (672bp) protein (224aa)
Flavin reductase n=218 Tax=Clostridium difficile RepID=D5Q3N0_CLODI
iron-sulfur flavoprotein
Putative NAD(P)H-dependent FMN reductase {ECO:0000313|EMBL:CCK98470.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
L3_129_062G1_scaffold_28_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1723..3939)
DNA (2217bp) protein (739aa)
putative xanthine dehydrogenase (EC:1.17.1.4)
Molybdopterin-binding domain of aldehyde dehydrogenase family protein n=2 Tax=Clostridium difficile RepID=T4PJE9_CLODI
Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding domain protein {ECO:0000313|EMBL:EHJ26694.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
L3_129_062G1_scaffold_28_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3942..4412)
DNA (471bp) protein (157aa)
xdhC2; xanthine dehydrogenase iron-sulfur binding subunit XdhC2 (EC:1.17.1.4)
2Fe-2S iron-sulfur cluster-binding domain protein n=16 Tax=Clostridium difficile RepID=D5Q3M7_CLODI
Putative carbon monoxide dehydrogenase, small subunit {ECO:0000313|EMBL:EHJ25822.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L3_129_062G1_scaffold_28_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4474..5895)
DNA (1422bp) protein (474aa)
Amidohydrolase family protein n=185 Tax=Clostridium difficile RepID=G6BQA5_CLODI
Amidohydrolase family protein {ECO:0000313|EMBL:EHJ26696.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
amidohydrolase
L3_129_062G1_scaffold_28_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5941..7302)
DNA (1362bp) protein (454aa)
Uracil-xanthine permease family protein n=11 Tax=Clostridium difficile RepID=T3FM29_CLODI
Putative permease {ECO:0000313|EMBL:EHJ26697.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
xanthine/uracile permease
L3_129_062G1_scaffold_28_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7600..8949)
DNA (1350bp) protein (450aa)
Xanthine permease family protein n=122 Tax=Clostridium difficile RepID=T2TM70_CLODI
xanthine/uracile permease
Putative xanthine/uracil permease {ECO:0000313|EMBL:CCL30307.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_129_062G1_scaffold_28_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9279..10319)
DNA (1041bp) protein (347aa)
AAA domain family protein n=201 Tax=Clostridium difficile RepID=C9XJV7_CLODC
sigma-54-dependent transcriptional regulator
AAA domain family protein {ECO:0000313|EMBL:EQE62934.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_129_062G1_scaffold_28_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10646..11914)
DNA (1269bp) protein (423aa)
McrBC 5-methylcytosine restriction system component family protein n=2 Tax=Clostridium difficile RepID=T3A4Z1_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ26701.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
conserved hypothetical protein
L3_129_062G1_scaffold_28_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11907..13841)
DNA (1935bp) protein (645aa)
ATPase family n=8 Tax=Clostridium difficile RepID=G6BCE4_CLODI
ATPase family {ECO:0000313|EMBL:EHJ26702.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
restriction enzyme
L3_129_062G1_scaffold_28_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13870..14592)
DNA (723bp) protein (241aa)
Uncharacterized protein n=9 Tax=Clostridium difficile RepID=G6BCE3_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ26703.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
hypothetical protein
L3_129_062G1_scaffold_28_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14642..15646)
DNA (1005bp) protein (335aa)
HTH domain protein n=3 Tax=Clostridium difficile RepID=G6BCE2_CLODI
HTH domain protein {ECO:0000313|EMBL:EHJ25814.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
hypothetical protein
L3_129_062G1_scaffold_28_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15685..16185)
DNA (501bp) protein (167aa)
Uncharacterized protein n=10 Tax=Clostridium difficile RepID=G6BCE1_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ25813.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
putative membrane protein, DUF988 family
L3_129_062G1_scaffold_28_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16470..16781)
DNA (312bp) protein (104aa)
Uncharacterized protein n=184 Tax=Clostridium difficile RepID=C9XJW3_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQE62839.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_129_062G1_scaffold_28_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16921..19185)
DNA (2265bp) protein (755aa)
XdhD; xanthine dehydrogenase subunit XdhD (EC:1.17.1.4)
Molybdopterin-binding domain of aldehyde dehydrogenase family protein n=1 Tax=Clostridium difficile CD69 RepID=T3A4Z7_CLODI
Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding domain protein {ECO:0000313|EMBL:EHJ25811.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L3_129_062G1_scaffold_28_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19189..19638)
DNA (450bp) protein (150aa)
2Fe-2S iron-sulfur cluster-binding domain protein n=8 Tax=Clostridium difficile RepID=G6BCD8_CLODI
2Fe-2S iron-sulfur cluster-binding domain protein {ECO:0000313|EMBL:EHJ26708.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
[2Fe-2S]-binding subunit of oxidoreductase
L3_129_062G1_scaffold_28_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19638..20426)
DNA (789bp) protein (263aa)
FAD binding domain in molybdopterin dehydrogenase n=6 Tax=Clostridium difficile RepID=D5Q3L4_CLODI
Xanthine dehydrogenase subunit XdhB,FAD-binding {ECO:0000313|EMBL:CCK94545.1}; TaxID=1225722 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E1.;"
FAD-binding subunit of oxidoreductase
L3_129_062G1_scaffold_28_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20621..21889)
DNA (1269bp) protein (423aa)
Transporter, CPA2 family n=190 Tax=Clostridium difficile RepID=G6BCD6_CLODI
Na(+)/H(+) antiporter
Putative Na(+)/H(+) antiporter {ECO:0000313|EMBL:CCK98488.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
L3_129_062G1_scaffold_28_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22230..22391)
DNA (162bp) protein (54aa)
Uncharacterized protein n=192 Tax=Clostridium difficile RepID=F3Y5U5_CLOD6
conserved hypothetical protein
Putative dNA polymerase III {ECO:0000313|EMBL:EQH98903.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
L3_129_062G1_scaffold_28_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22540..23622)
DNA (1083bp) protein (361aa)
ABC-type transport system, permease n=113 Tax=Clostridium difficile RepID=Q188H2_CLOD6
ABC transporter permease
ABC-type transport system, permease {ECO:0000313|EMBL:CAJ68988.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_129_062G1_scaffold_28_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23725..25320)
DNA (1596bp) protein (532aa)
Putative membrane protein n=6 Tax=Clostridium difficile RepID=T3T0K8_CLODI
Putative membrane protein {ECO:0000313|EMBL:EQI83062.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
ABC-type transport system, permease
L3_129_062G1_scaffold_28_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25367..26074)
DNA (708bp) protein (236aa)
ABC transporter, ATP-binding protein n=8 Tax=Clostridium difficile RepID=G6BCD2_CLODI
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EHJ25804.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
ABC transporter ATP-binding protein
L3_129_062G1_scaffold_28_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26326..27471
DNA (1146bp) protein (382aa)
DEAD/DEAH box helicase n=9 Tax=Clostridium difficile RepID=G6BCD1_CLODI
putative ATP-dependent RNA helicase
DEAD/DEAH box helicase {ECO:0000313|EMBL:EHJ25803.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L3_129_062G1_scaffold_28_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27584..28960)
DNA (1377bp) protein (459aa)
Permease family protein n=26 Tax=Clostridium difficile RepID=T2TJC4_CLODI
Putative permease {ECO:0000313|EMBL:EHJ26716.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
xanthine/uracil permease
L3_129_062G1_scaffold_28_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29405..30751
DNA (1347bp) protein (449aa)
MATE efflux family protein n=16 Tax=Clostridium difficile RepID=G6BCC9_CLODI
MATE efflux family protein {ECO:0000313|EMBL:EHJ26717.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
drug/sodium antiporter
L3_129_062G1_scaffold_28_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30811..32223
DNA (1413bp) protein (471aa)
Citrate transporter n=8 Tax=Clostridium difficile RepID=G6BCC8_CLODI
Citrate transporter {ECO:0000313|EMBL:EHJ25800.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
sodium:sulfate symporter
L3_129_062G1_scaffold_28_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32345..33019)
DNA (675bp) protein (225aa)
putative transaldolase C-like (EC:2.2.1.2)
Transaldolase {ECO:0000256|SAAS:SAAS00118670}; EC=2.2.1.2 {ECO:0000256|SAAS:SAAS00118670};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Fructose-6-phosphate aldolase n=146 Tax=Clostridium difficile RepID=T3GIM9_CLODC
L3_129_062G1_scaffold_28_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33293..34057
DNA (765bp) protein (255aa)
DeoR-family transcriptional regulator n=21 Tax=Clostridium difficile RepID=C9XJX6_CLODC
DeoR family transcriptional regulator
Transcriptional regulator, DeoR family {ECO:0000313|EMBL:EHJ26720.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
L3_129_062G1_scaffold_28_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34344..34565)
DNA (222bp) protein (74aa)
Uncharacterized protein n=164 Tax=Clostridium difficile RepID=C9XJX7_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL30330.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_129_062G1_scaffold_28_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34966..36243)
DNA (1278bp) protein (426aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=8 Tax=Clostridium difficile RepID=G6BCC4_CLODI
two-component sensor histidine kinase
Displaying items 1-30 of 209 in total

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