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L3_129_062G1_scaffold_43

Search features with annotation key words

Displaying items 1-30 of 214 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_129_062G1_scaffold_43_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3..722
DNA (720bp) protein (240aa)
ABC transporter, permease protein n=8 Tax=Clostridium difficile RepID=G6B988_CLODI
ABC transporter permease
ABC transporter, permease protein {ECO:0000313|EMBL:EHJ29055.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L3_129_062G1_scaffold_43_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

679..1626
DNA (948bp) protein (316aa)
ABC transporter, permease protein n=8 Tax=Clostridium difficile RepID=G6B989_CLODI
ABC transporter, permease protein {ECO:0000313|EMBL:EHJ29170.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
ABC-type transport system, sugar-familypermease
L3_129_062G1_scaffold_43_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1657..2961
DNA (1305bp) protein (435aa)
Bacterial extracellular solute-binding family protein n=182 Tax=Clostridium difficile RepID=T3G1C8_CLODC
sugar family ABC transporter substrate-binding protein
ABC transporter, solute-binding protein {ECO:0000313|EMBL:EHJ29057.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L3_129_062G1_scaffold_43_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3024..4286
DNA (1263bp) protein (421aa)
Type I phosphodiesterase / nucleotide pyrophosphatase n=8 Tax=Clostridium difficile RepID=G6B991_CLODI
Type I phosphodiesterase / nucleotide pyrophosphatase {ECO:0000313|EMBL:EHJ29172.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
nucleotide pyrophosphatase
L3_129_062G1_scaffold_43_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4449..6443
DNA (1995bp) protein (665aa)
UvrABC system protein B n=10 Tax=Clostridium difficile RepID=G6B992_CLODI
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
uvrB; excinuclease ABC subunit B
L3_129_062G1_scaffold_43_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6462..9287
DNA (2826bp) protein (942aa)
UvrABC system protein A n=1 Tax=Clostridium difficile CD002 RepID=U3VW41_CLODI
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
uvrA; excinuclease ABC subunit A
L3_129_062G1_scaffold_43_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9549..11366
DNA (1818bp) protein (606aa)
UvrABC system protein C n=8 Tax=Clostridium difficile RepID=G6B994_CLODI
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
uvrC; Excinuclease ABC subunit C
L3_129_062G1_scaffold_43_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11366..12295
DNA (930bp) protein (310aa)
HPr kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058411}; Short=HPrK/P {ECO:0000256|HAMAP-Rule:MF_01249};; EC=2.7.11.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058427};; EC=2.7.4.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058435};; HPr(Ser) kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
HPr kinase/phosphorylase n=215 Tax=Clostridium difficile RepID=C9XRZ8_CLODC
HPr kinase/phosphorylase
L3_129_062G1_scaffold_43_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12507..14303
DNA (1797bp) protein (599aa)
Putative DNA mismatch repair ATPase MutS n=1 Tax=Clostridium difficile CD002 RepID=U3VU14_CLODI
MutS domain V protein {ECO:0000313|EMBL:EHJ29063.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
DNA mismatch repair protein
L3_129_062G1_scaffold_43_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14443..16224)
DNA (1782bp) protein (594aa)
Putative iron-only hydrogenase, catalytic subunit HymC-like {ECO:0000313|EMBL:CCK99851.1}; EC=1.6.99.5 {ECO:0000313|EMBL:CCK99851.1};; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
putative iron-only hydrogenase, catalyticsubunit HymC-like (EC:1.6.99.5)
Hydrogenase, Fe-only n=6 Tax=Clostridium difficile RepID=D5Q7A8_CLODI
L3_129_062G1_scaffold_43_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16247..18133)
DNA (1887bp) protein (629aa)
4Fe-4S binding domain protein n=211 Tax=Clostridium difficile RepID=C9XRZ5_CLODC
4Fe-4S binding domain protein {ECO:0000313|EMBL:EQE59003.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
iron-only hydrogenase, electron-transferring subunit
L3_129_062G1_scaffold_43_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18150..18647)
DNA (498bp) protein (166aa)
iron-only hydrogenase electron-transferring subunit HymA-like protein (EC:1.6.99.5)
Putative iron-only hydrogenase,electron-transferring subunit HymA-like {ECO:0000313|EMBL:CAJ70308.1}; EC=1.6.99.5 {ECO:0000313|EMBL:CAJ70308.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
Respiratory-chain NADH dehydrogenase 24 Kd subunit n=210 Tax=Clostridium difficile RepID=T3G5G6_CLODC
L3_129_062G1_scaffold_43_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18965..20446)
DNA (1482bp) protein (494aa)
Cardiolipin synthetase (Cardiolipin synthase) (CL synthase) {ECO:0000313|EMBL:CAJ70307.1}; EC=2.7.8.- {ECO:0000313|EMBL:CAJ70307.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
Cardiolipin synthase n=178 Tax=Clostridium difficile RepID=C9XRZ3_CLODC
cardiolipin synthase
L3_129_062G1_scaffold_43_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20764..21534
DNA (771bp) protein (257aa)
Formate/nitrite transporter n=171 Tax=Clostridium difficile RepID=G6B9A1_CLODI
putative formate/nitrite transporter
Formate/nitrite transporter family protein {ECO:0000313|EMBL:EQE59059.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_129_062G1_scaffold_43_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21768..22721
DNA (954bp) protein (318aa)
UDP-N-acetylenolpyruvoylglucosamine reductase {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00041869}; EC=1.3.1.98 {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00057125};; UDP-N-acetylmuramate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00037}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
UDP-N-acetylenolpyruvoylglucosamine reductase n=6 Tax=Clostridium difficile RepID=D5Q7B3_CLODI
murB; UDP-N-acetylenolpyruvoylglucosamine reductase
L3_129_062G1_scaffold_43_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22725..23438
DNA (714bp) protein (238aa)
PHP domain protein n=6 Tax=Clostridium difficile RepID=T4ABV9_CLODI
phosphoesterase
Putative phosphoesterase {ECO:0000313|EMBL:CBE07142.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_129_062G1_scaffold_43_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23469..24326
DNA (858bp) protein (286aa)
UPF0042 nucleotide-binding protein CD196_3176 n=13 Tax=Clostridium difficile RepID=C9XRY9_CLODC
hypothetical protein
Nucleotide-binding protein CDR20291_3222 {ECO:0000256|HAMAP-Rule:MF_00636}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_129_062G1_scaffold_43_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24338..25444
DNA (1107bp) protein (369aa)
Putative gluconeogenesis factor n=173 Tax=Clostridium difficile RepID=C9XRY8_CLODC
hypothetical protein
Putative gluconeogenesis factor {ECO:0000256|HAMAP-Rule:MF_00973}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_129_062G1_scaffold_43_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25513..25938
DNA (426bp) protein (142aa)
Hydrolase, NUDIX family n=205 Tax=Clostridium difficile RepID=D5Q7B7_CLODI
DNA repair protein
Putative hydrolase, NUDIX family {ECO:0000313|EMBL:CCL23847.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_129_062G1_scaffold_43_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25955..26908
DNA (954bp) protein (318aa)
Putative sporulation transcription regulator WhiA n=8 Tax=Clostridium difficile RepID=G6B9A7_CLODI
Putative sporulation transcription regulator WhiA {ECO:0000256|HAMAP-Rule:MF_01420, ECO:0000256|SAAS:SAAS00005305}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
hypothetical protein
L3_129_062G1_scaffold_43_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27059..30628
DNA (3570bp) protein (1190aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
DNA polymerase III, alpha subunit n=8 Tax=Clostridium difficile RepID=G6B9A8_CLODI
dnaE; DNA polymerase III DnaE
L3_129_062G1_scaffold_43_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30837..31796
DNA (960bp) protein (320aa)
ATP-dependent 6-phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339}; Short=ATP-PFK {ECO:0000256|HAMAP-Rule:MF_00339};; Short=Phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339};; EC=2.7.1.11 {ECO:0000256|HAMAP-Rule:MF_00339};; Phosphohexokinase {ECO:0000256|HAMAP-Rule:MF_00339}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
6-phosphofructokinase n=204 Tax=Clostridium difficile RepID=K6PF_CLOD6
6-phosphofructokinase
L3_129_062G1_scaffold_43_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31848..33608
DNA (1761bp) protein (587aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
Pyruvate kinase n=8 Tax=Clostridium difficile RepID=G6B9B0_CLODI
pykF; pyruvate kinase
L3_129_062G1_scaffold_43_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33783..35141
DNA (1359bp) protein (453aa)
23S rRNA (Uracil-5-)-methyltransferase RumA n=7 Tax=Clostridium difficile RepID=G6B9B1_CLODI
23S rRNA (Uracil-5-)-methyltransferase RumA {ECO:0000313|EMBL:EHJ29192.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
RNA methyltransferase
L3_129_062G1_scaffold_43_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35608..36105)
DNA (498bp) protein (166aa)
Uncharacterized protein n=5 Tax=Clostridium difficile RepID=G6B9B2_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ29193.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
hypothetical protein
L3_129_062G1_scaffold_43_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36432..36608)
DNA (177bp) protein (59aa)
Uncharacterized protein n=190 Tax=Clostridium difficile RepID=F3Y5W2_CLOD6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFH15105.1}; TaxID=525258 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile NAP07.;"
L3_129_062G1_scaffold_43_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

37577..37978
DNA (402bp) protein (134aa)
Uncharacterized protein n=8 Tax=Clostridium difficile RepID=G6B9B4_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ29081.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
hypothetical protein
L3_129_062G1_scaffold_43_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

37975..39042
DNA (1068bp) protein (356aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820, ECO:0000313|EMBL:CKG75773.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Putative ribosome biogenesis GTPase RsgA n=8 Tax=Clostridium difficile RepID=G6B9B5_CLODI
GTPase
L3_129_062G1_scaffold_43_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

39580..40278
DNA (699bp) protein (233aa)
Uncharacterized protein n=7 Tax=Clostridium difficile RepID=G6B9B6_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ29083.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
hypothetical protein
L3_129_062G1_scaffold_43_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

40456..41346
DNA (891bp) protein (297aa)
Putative exported protein n=1 Tax=Clostridium difficile P29 RepID=T4NDW8_CLODI
putative exported protein
Putative exported protein {ECO:0000313|EMBL:CAJ70265.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
Displaying items 1-30 of 214 in total

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