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L3_130_000G1_scaffold_3655

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_130_000G1_scaffold_3655_1
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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2..520
DNA (519bp) protein (173aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=565040 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain 157F).;"
DNA-directed RNA polymerase subunit beta n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZST7_BIFLJ
DNA-directed RNA polymerase beta subunit
L3_130_000G1_scaffold_3655_2
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

688..4725
DNA (4038bp) protein (1346aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
DNA-directed RNA polymerase subunit beta' n=13 Tax=Bacteria RepID=RPOC_BIFLD
rpoC; rpoc
L3_130_000G1_scaffold_3655_3
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(4884..5516)
DNA (633bp) protein (211aa)
Forkhead domain protein n=14 Tax=Bacteria RepID=E4R014_BIFLM
hypothetical protein
Signal peptide protein {ECO:0000313|EMBL:AIW43402.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L3_130_000G1_scaffold_3655_4
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5532..6047)
DNA (516bp) protein (172aa)
Uncharacterized protein n=5 Tax=Bifidobacterium longum RepID=C5E852_BIFLI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EEQ54250.1}; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
L3_130_000G1_scaffold_3655_5
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6074..7006)
DNA (933bp) protein (311aa)
Phosphatase n=10 Tax=Bifidobacterium longum RepID=F8ASE6_BIFLN
phosphatase
Protein phosphatase {ECO:0000313|EMBL:KEY23323.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L3_130_000G1_scaffold_3655_6
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7003..9516)
DNA (2514bp) protein (838aa)
Transglutaminase like protein n=2 Tax=Bifidobacterium longum RepID=S3DM16_BIFLN
Uncharacterized protein {ECO:0000313|EMBL:BAP83113.1}; TaxID=216816 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum.;"
hypothetical protein
L3_130_000G1_scaffold_3655_7
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9513..10736)
DNA (1224bp) protein (408aa)
Uncharacterized protein n=7 Tax=Bifidobacterium RepID=Q8G519_BIFLO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIW43406.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L3_130_000G1_scaffold_3655_8
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10761..18056)
DNA (7296bp) protein (2432aa)
Fibronectin type III domain protein n=2 Tax=Bifidobacterium longum subsp. longum RepID=I3ASX4_BIFLN
hypothetical protein
Fibronectin type III domain protein {ECO:0000313|EMBL:EIJ32262.1}; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
L3_130_000G1_scaffold_3655_9
Bifidobacterium sp. 12_1_47BFAA, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18223..19200)
DNA (978bp) protein (326aa)
Kinase domain protein n=2 Tax=Bifidobacterium longum subsp. longum RepID=I3ASR5_BIFLN
kinase
Kinase domain-containing protein {ECO:0000313|EMBL:EFV37401.1}; TaxID=469594 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. 12_1_47BFAA.;"
L3_130_000G1_scaffold_3655_10
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19184..19579)
DNA (396bp) protein (132aa)
Serine/threonine protein kinase n=13 Tax=Bifidobacterium RepID=B3DTD3_BIFLD
kinase
Probable serine/threonine-protein kinase {ECO:0000313|EMBL:AAN25003.1}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
L3_130_000G1_scaffold_3655_11
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19711..24021
DNA (4311bp) protein (1437aa)
ATP-dependent DNA helicase, UvrD/REP family n=1 Tax=Bifidobacterium longum E18 RepID=V6XX18_BIFLN
ATP-dependent DNA helicase, UvrD/REP family {ECO:0000313|EMBL:ESV33031.1}; TaxID=1322347 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum E18.;"
hypothetical protein
L3_130_000G1_scaffold_3655_12
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24018..28049
DNA (4032bp) protein (1344aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
ATP-dependent DNA helicase, UvrD/REP family n=4 Tax=Bifidobacterium RepID=V6XUW4_BIFLN
uvrD3; superfamily I DNA and RNA helicase
L3_130_000G1_scaffold_3655_13
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28195..29514
DNA (1320bp) protein (440aa)
Uncharacterized protein n=12 Tax=Bifidobacterium RepID=B3DTD0_BIFLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACD98399.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L3_130_000G1_scaffold_3655_14
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29850..30605
DNA (756bp) protein (252aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=1322347 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum E18.;"
4-hydroxy-tetrahydrodipicolinate reductase n=8 Tax=Bifidobacterium longum RepID=D6D9P5_BIFLN
dihydrodipicolinate reductase
L3_130_000G1_scaffold_3655_15
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30747..31673
DNA (927bp) protein (309aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=216816 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum.;"
4-hydroxy-tetrahydrodipicolinate synthase n=2 Tax=Bifidobacterium RepID=R5NBI0_9BIFI
dihydrodipicolinate synthase
L3_130_000G1_scaffold_3655_16
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31716..33608
DNA (1893bp) protein (631aa)
Uncharacterized protein n=9 Tax=Bifidobacterium RepID=Q8G528_BIFLO
Uncharacterized protein {ECO:0000313|EMBL:AAN24997.1}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
hypothetical protein
L3_130_000G1_scaffold_3655_17
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

33650..36124
DNA (2475bp) protein (825aa)
Membrane alanyl aminopeptidase . Metallo peptidase. MEROPS family M01 {ECO:0000313|EMBL:CBK70895.1}; EC=3.4.11.2 {ECO:0000313|EMBL:CBK70895.1};; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
Membrane alanyl aminopeptidase . Metallo peptidase. MEROPS family M01 (EC:3.4.11.2)
Membrane alanyl aminopeptidase . Metallo peptidase. MEROPS family M01 n=1 Tax=Bifidobacterium longum subsp. longum F8 RepID=D6D9P2_BIFLN
L3_130_000G1_scaffold_3655_18
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

36281..36997
DNA (717bp) protein (239aa)
Putative uncharacterized protein n=2 Tax=Bifidobacterium longum RepID=D6ZSW4_BIFLJ
hypothetical protein
Putative TauE-like protein {ECO:0000313|EMBL:ESV33038.1}; TaxID=1322347 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum E18.;"
Displaying 18 items

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