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L3_130_000M1_scaffold_273

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_130_000M1_scaffold_273_1
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(181..1011)
DNA (831bp) protein (277aa)
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphate phosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
undecaprenyl-diphosphatase (EC:3.6.1.27)
Undecaprenyl-diphosphatase n=2 Tax=Clostridiales RepID=U2QWF7_9FIRM
L3_130_000M1_scaffold_273_2
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1227..2054)
DNA (828bp) protein (276aa)
Uncharacterized protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2QP34_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK43068.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
acetyl esterase
L3_130_000M1_scaffold_273_3
Clostridium sp. CAG:678, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2351..4162)
DNA (1812bp) protein (604aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:678 RepID=R5L319_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY67701.1}; TaxID=1262831 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:678.;"
hypothetical protein
L3_130_000M1_scaffold_273_4
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4459..7962)
DNA (3504bp) protein (1168aa)
Putative uncharacterized protein n=1 Tax=Clostridium hathewayi WAL-18680 RepID=G5ILV3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHI57372.1}; TaxID=742737 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi WAL-18680.;"
hypothetical protein
L3_130_000M1_scaffold_273_5
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8276..9121
DNA (846bp) protein (282aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:50 RepID=R5TLA1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ64104.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
AraC family transcriptional regulator
L3_130_000M1_scaffold_273_6
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9353..10309
DNA (957bp) protein (319aa)
Biotin synthase {ECO:0000256|HAMAP-Rule:MF_01694, ECO:0000256|SAAS:SAAS00009987}; EC=2.8.1.6 {ECO:0000256|HAMAP-Rule:MF_01694, ECO:0000256|SAAS:SAAS00250466};; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
Biotin synthase n=1 Tax=Roseburia sp. CAG:50 RepID=R5TEP4_9FIRM
biotin synthase
L3_130_000M1_scaffold_273_7
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10327..10893
DNA (567bp) protein (189aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5TYT0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ64106.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
BioY protein
L3_130_000M1_scaffold_273_8
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11422..12969)
DNA (1548bp) protein (516aa)
Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
Ribonuclease Y n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2NYA2_9FIRM
metal dependent phosphohydrolase
L3_130_000M1_scaffold_273_9
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13254..13850)
DNA (597bp) protein (199aa)
Regulatory protein RecX n=2 Tax=Clostridiales RepID=R5TEM1_9FIRM
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
hypothetical protein
L3_130_000M1_scaffold_273_10
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(13850..14944)
DNA (1095bp) protein (365aa)
Protein RecA n=2 Tax=Clostridiales RepID=R5TLB3_9FIRM
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
protein RecA
L3_130_000M1_scaffold_273_11
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15192..15503)
DNA (312bp) protein (104aa)
Thioredoxin n=1 Tax=Roseburia sp. CAG:50 RepID=R5TEQ4_9FIRM
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
thioredoxin
L3_130_000M1_scaffold_273_12
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15613..17202)
DNA (1590bp) protein (530aa)
Peptide chain release factor 3 n=2 Tax=Clostridiales RepID=R5TYT7_9FIRM
Peptide chain release factor 3 {ECO:0000256|HAMAP-Rule:MF_00072, ECO:0000256|SAAS:SAAS00089051}; Short=RF-3 {ECO:0000256|HAMAP-Rule:MF_00072};; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
peptide chain release factor 3
L3_130_000M1_scaffold_273_13
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17337..18491)
DNA (1155bp) protein (385aa)
Phosphopentomutase {ECO:0000256|HAMAP-Rule:MF_00740, ECO:0000256|SAAS:SAAS00010015}; EC=5.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00740, ECO:0000256|SAAS:SAAS00009998};; Phosphodeoxyribomutase {ECO:0000256|HAMAP-Rule:MF_00740}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
Phosphopentomutase n=1 Tax=Roseburia sp. CAG:50 RepID=R5U4V3_9FIRM
hypothetical protein
L3_130_000M1_scaffold_273_14
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18631..19329)
DNA (699bp) protein (233aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5TEM3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK43011.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
hypothetical protein
L3_130_000M1_scaffold_273_15
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19326..19967)
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:50 RepID=R5TLB6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ64124.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
hypothetical protein
L3_130_000M1_scaffold_273_16
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19967..20506)
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:50 RepID=R5TEQ7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ64125.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
Stage III sporulation protein AF (Spore_III_AF).
L3_130_000M1_scaffold_273_17
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20464..21831)
DNA (1368bp) protein (456aa)
Putative stage III sporulation protein AE n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2PGZ9_9FIRM
Putative stage III sporulation protein AE {ECO:0000313|EMBL:ERK43014.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
sporulation stage III, protein AE
L3_130_000M1_scaffold_273_18
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21959..22348)
DNA (390bp) protein (130aa)
Stage III sporulation protein AD n=2 Tax=Clostridiales RepID=R5U4V9_9FIRM
Stage III sporulation protein AD {ECO:0000313|EMBL:CCZ64127.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
Stage III sporulation protein AC/AD protein family.
L3_130_000M1_scaffold_273_19
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22378..22572)
DNA (195bp) protein (65aa)
Stage III sporulation protein AC n=2 Tax=Clostridiales RepID=R5TEM8_9FIRM
Stage III sporulation protein AC {ECO:0000313|EMBL:CCZ64128.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
stage III sporulation protein AC
L3_130_000M1_scaffold_273_20
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22735..23256)
DNA (522bp) protein (174aa)
Putative stage III sporulation protein AB n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2QWB2_9FIRM
Putative stage III sporulation protein AB {ECO:0000313|EMBL:ERK43017.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
sporulation stage III protein AB
L3_130_000M1_scaffold_273_21
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23247..24191)
DNA (945bp) protein (315aa)
Stage III sporulation protein AA n=1 Tax=Roseburia sp. CAG:50 RepID=R5TER1_9FIRM
Stage III sporulation protein AA {ECO:0000313|EMBL:CCZ64130.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
stage III sporulation protein AA
L3_130_000M1_scaffold_273_22
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24605..24781)
DNA (177bp) protein (59aa)
30S ribosomal protein S21 n=3 Tax=Clostridiales RepID=R5TYU4_9FIRM
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
SSU ribosomal protein S21P
L3_130_000M1_scaffold_273_23
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(25013..27667)
DNA (2655bp) protein (885aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
alaS; alanyl-tRNA synthetase (EC:6.1.1.7)
Alanine--tRNA ligase n=1 Tax=Roseburia sp. CAG:50 RepID=R5U4W4_9FIRM
L3_130_000M1_scaffold_273_24
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27927..29234)
DNA (1308bp) protein (436aa)
Chloride channel protein EriC n=1 Tax=Roseburia sp. CAG:50 RepID=R5TEN2_9FIRM
Chloride channel protein EriC {ECO:0000313|EMBL:CCZ64133.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
Chloride channel protein EriC
L3_130_000M1_scaffold_273_25
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29231..29707)
DNA (477bp) protein (159aa)
Ribonuclease H {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437}; Short=RNase H {ECO:0000256|HAMAP-Rule:MF_00042};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437};; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
Ribonuclease H n=2 Tax=Clostridiales RepID=R5TLC2_9FIRM
RnhA; ribonuclease HI
L3_130_000M1_scaffold_273_26
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29713..31020)
DNA (1308bp) protein (436aa)
Cytosine deaminase and related metal-dependent hydrolases n=1 Tax=Roseburia sp. CAG:50 RepID=R5TER3_9FIRM
Cytosine deaminase and related metal-dependent hydrolases {ECO:0000313|EMBL:CCZ64135.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
Cytosine deaminase and related metal-dependent hydrolases
L3_130_000M1_scaffold_273_27
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31148..31993)
DNA (846bp) protein (282aa)
Purine nucleoside phosphorylase {ECO:0000256|PIRNR:PIRNR000477}; EC=2.4.2.1 {ECO:0000256|PIRNR:PIRNR000477};; Inosine-guanosine phosphorylase {ECO:0000256|PIRNR:PIRNR000477}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
Purine nucleoside phosphorylase n=1 Tax=Roseburia sp. CAG:50 RepID=R5TYU7_9FIRM
hypothetical protein
L3_130_000M1_scaffold_273_28
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32195..33667)
DNA (1473bp) protein (491aa)
Stage IV sporulation protein A {ECO:0000256|PIRNR:PIRNR007466}; EC=3.6.1.3 {ECO:0000256|PIRNR:PIRNR007466};; Coat morphogenetic protein SpoIVA {ECO:0000256|PIRNR:PIRNR007466}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
Stage IV sporulation protein A n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2PFV0_9FIRM
stage IV sporulation protein A
L3_130_000M1_scaffold_273_29
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33837..34256)
DNA (420bp) protein (140aa)
Oxidoreductase n=2 Tax=Clostridiales RepID=U2QWB9_9FIRM
Oxidoreductase {ECO:0000313|EMBL:CCZ64138.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
C_GCAxxG_C_C family protein
L3_130_000M1_scaffold_273_30
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34474..34899
DNA (426bp) protein (142aa)
HTH-type transcriptional activator HxlR domain protein n=2 Tax=Clostridiales RepID=U2QP03_9FIRM
Predicted transcriptional regulator {ECO:0000313|EMBL:CCZ64139.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
putative transcriptional regulator
Displaying items 1-30 of 38 in total

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