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L3_130_000M1_scaffold_274

Search features with annotation key words

Displaying items 1-30 of 53 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_130_000M1_scaffold_274_1
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2..1378)
DNA (1377bp) protein (459aa)
23S rRNA m(5)U-1939 methyltransferase (EC:2.1.1.-)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:50 RepID=R5TI10_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ65328.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
L3_130_000M1_scaffold_274_2
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1577..2521)
DNA (945bp) protein (315aa)
HDIG domain protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2PZZ9_9FIRM
HDIG domain protein {ECO:0000313|EMBL:ERK49671.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
HD-superfamily hydrolase
L3_130_000M1_scaffold_274_3
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2658..3905)
DNA (1248bp) protein (416aa)
PDZ/DHR/GLGF domain protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2RG03_9FIRM
PDZ/DHR/GLGF domain protein {ECO:0000313|EMBL:ERK49672.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
HtrA-like serine protease (with PDZ domain)
L3_130_000M1_scaffold_274_4
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4141..6516
DNA (2376bp) protein (792aa)
Endonuclease MutS2 {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084206}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084246};; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
Endonuclease MutS2 n=1 Tax=Roseburia sp. CAG:50 RepID=R5U2H6_9FIRM
DNA mismatch repair protein
L3_130_000M1_scaffold_274_5
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6527..7225
DNA (699bp) protein (233aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5U8J0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ65332.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L3_130_000M1_scaffold_274_6
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7307..8659
DNA (1353bp) protein (451aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=2 Tax=Clostridiales RepID=U2PZP1_9FIRM
sensory transduction histidine kinase
L3_130_000M1_scaffold_274_7
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8827..9381)
DNA (555bp) protein (185aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5TPQ4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ65334.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
L3_130_000M1_scaffold_274_8
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9418..10800)
DNA (1383bp) protein (461aa)
TIGR00366 family protein n=2 Tax=Clostridiales RepID=U2Q0Q1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ65335.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
hypothetical protein
L3_130_000M1_scaffold_274_9
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11080..12621
DNA (1542bp) protein (514aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:50 RepID=R5U2I3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ65336.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
hypothetical protein
L3_130_000M1_scaffold_274_10
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12828..13001)
DNA (174bp) protein (58aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5TJB0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ65780.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
L3_130_000M1_scaffold_274_11
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(13380..13904)
DNA (525bp) protein (175aa)
50S ribosomal protein L17 n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2RFQ3_9FIRM
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
rplQ; 50S ribosomal protein L17
L3_130_000M1_scaffold_274_12
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14084..15097)
DNA (1014bp) protein (338aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
DNA-directed RNA polymerase subunit alpha n=2 Tax=Clostridiales RepID=R5TJ68_9FIRM
DNA-directed RNA polymerase subunit alpha
L3_130_000M1_scaffold_274_13
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(15172..15765)
DNA (594bp) protein (198aa)
30S ribosomal protein S4 n=2 Tax=Clostridiales RepID=R5U9X7_9FIRM
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
SSU ribosomal protein S4P
L3_130_000M1_scaffold_274_14
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(15785..16180)
DNA (396bp) protein (132aa)
30S ribosomal protein S11 n=2 Tax=Clostridiales RepID=R5U3R3_9FIRM
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
30S ribosomal protein S11
L3_130_000M1_scaffold_274_15
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(16263..16631)
DNA (369bp) protein (123aa)
30S ribosomal protein S13 n=2 Tax=Clostridiales RepID=R5TJA4_9FIRM
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
30S ribosomal protein S13
L3_130_000M1_scaffold_274_16
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17309..17527)
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=2 Tax=Clostridiales RepID=R5TR46_9FIRM
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
translation initiation factor IF-1
L3_130_000M1_scaffold_274_17
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17542..17817)
DNA (276bp) protein (92aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5TJ63_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ65773.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
hypothetical protein
L3_130_000M1_scaffold_274_18
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17808..18605)
DNA (798bp) protein (266aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
Methionine aminopeptidase n=1 Tax=Roseburia sp. CAG:50 RepID=R5U9X2_9FIRM
Map; methionine aminopeptidase
L3_130_000M1_scaffold_274_19
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18627..19271)
DNA (645bp) protein (215aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
Adenylate kinase (EC:2.7.4.3)
Adenylate kinase n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2PZQ5_9FIRM
L3_130_000M1_scaffold_274_20
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(19411..20727)
DNA (1317bp) protein (439aa)
Protein translocase subunit SecY n=2 Tax=Clostridiales RepID=R5TJ97_9FIRM
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
SecY; preprotein translocase subunit SecY
L3_130_000M1_scaffold_274_21
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(20727..21167)
DNA (441bp) protein (147aa)
50S ribosomal protein L15 n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2R7G6_9FIRM
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
LSU ribosomal protein L15P
L3_130_000M1_scaffold_274_22
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(21186..21368)
DNA (183bp) protein (61aa)
50S ribosomal protein L30 n=2 Tax=Clostridiales RepID=R5TJ59_9FIRM
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
RpmD; 50S ribosomal protein L30/L7E
L3_130_000M1_scaffold_274_23
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(21382..21891)
DNA (510bp) protein (170aa)
30S ribosomal protein S5 n=2 Tax=Clostridiales RepID=R5U9W7_9FIRM
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
RpsE; 30S ribosomal protein S5
L3_130_000M1_scaffold_274_24
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(21909..22277)
DNA (369bp) protein (123aa)
50S ribosomal protein L18 n=2 Tax=Clostridiales RepID=R5U3Q1_9FIRM
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
RplR; 50S ribosomal protein L18
L3_130_000M1_scaffold_274_25
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(22296..22835)
DNA (540bp) protein (180aa)
50S ribosomal protein L6 n=2 Tax=Clostridiales RepID=R5TJ91_9FIRM
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
LSU ribosomal protein L6P
L3_130_000M1_scaffold_274_26
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(23169..23570)
DNA (402bp) protein (134aa)
30S ribosomal protein S8 n=2 Tax=Clostridiales RepID=R5TR37_9FIRM
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
Ribosomal protein S8
L3_130_000M1_scaffold_274_27
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(23624..23809)
DNA (186bp) protein (62aa)
30S ribosomal protein S14 type Z n=2 Tax=Clostridiales RepID=R5TJ54_9FIRM
30S ribosomal protein S14 type Z {ECO:0000256|HAMAP-Rule:MF_01364}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
Ribosomal protein S14
L3_130_000M1_scaffold_274_28
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(23825..24364)
DNA (540bp) protein (180aa)
50S ribosomal protein L5 n=2 Tax=Clostridiales RepID=R5U9W2_9FIRM
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
rplE; 50S ribosomal protein L5
L3_130_000M1_scaffold_274_29
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(24388..24693)
DNA (306bp) protein (102aa)
50S ribosomal protein L24 n=2 Tax=Clostridiales RepID=R5U3P6_9FIRM
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
LSU ribosomal protein L24P
L3_130_000M1_scaffold_274_30
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(24707..25075)
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=2 Tax=Clostridiales RepID=R5TJ85_9FIRM
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
50S ribosomal protein L14
Displaying items 1-30 of 53 in total

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