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L3_130_000M1_scaffold_293

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_130_000M1_scaffold_293_1
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3..554)
DNA (552bp) protein (184aa)
Glutamate 5-kinase {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00186442}; EC=2.7.2.11 {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00186442};; Gamma-glutamyl kinase {ECO:0000256|HAMAP-Rule:MF_00456}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
Glutamate 5-kinase n=2 Tax=Clostridiales RepID=R5U8W2_9FIRM
hypothetical protein
L3_130_000M1_scaffold_293_2
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(818..1627)
DNA (810bp) protein (270aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5TID0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ65443.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
ferredoxin
L3_130_000M1_scaffold_293_3
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1640..2215)
DNA (576bp) protein (192aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5TQ36_9FIRM
Electron transport complex subunit A {ECO:0000256|HAMAP-Rule:MF_00459}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
hypothetical protein
L3_130_000M1_scaffold_293_4
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2231..2965)
DNA (735bp) protein (245aa)
Na+-transporting NADH n=2 Tax=Clostridiales RepID=R5TIE7_9FIRM
Electron transport complex subunit E {ECO:0000256|HAMAP-Rule:MF_00478}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
NqrD; Na+-transporting NADH
L3_130_000M1_scaffold_293_5
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2984..3586)
DNA (603bp) protein (201aa)
Electron transport complex, RnfABCDGE type, G subunit n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2RKS8_9FIRM
Electron transport complex subunit G {ECO:0000256|HAMAP-Rule:MF_00479}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
Predicted NADH:ubiquinone oxidoreductase, subunit RnfG
L3_130_000M1_scaffold_293_6
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3586..4527)
DNA (942bp) protein (314aa)
Na+-transporting NADH:ubiquinone oxidoreductase subunit 2 n=2 Tax=Clostridiales RepID=R5U8W9_9FIRM
Electron transport complex subunit D {ECO:0000256|HAMAP-Rule:MF_00462}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
NqrB; Na+-transporting NADH:ubiquinone oxidoreductase subunit 2
L3_130_000M1_scaffold_293_7
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4554..5924)
DNA (1371bp) protein (457aa)
Electron transport complex, RnfABCDGE type, C subunit n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2Q5K1_9FIRM
Electron transport complex subunit C {ECO:0000256|HAMAP-Rule:MF_00461}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
rnfC/nqrF
L3_130_000M1_scaffold_293_8
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6071..7207
DNA (1137bp) protein (379aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:50 RepID=R5TQ40_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ65449.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
hypothetical protein
L3_130_000M1_scaffold_293_9
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(7413..8495)
DNA (1083bp) protein (361aa)
Putative ribosomal protein S1 n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2Q4K3_9FIRM
Putative ribosomal protein S1 {ECO:0000313|EMBL:ERK51321.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
Ribosomal protein S1
L3_130_000M1_scaffold_293_10
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8476..9357)
DNA (882bp) protein (294aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
(E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) (EC:1.17.1.2)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=2 Tax=root RepID=R5U2V6_9FIRM
L3_130_000M1_scaffold_293_11
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9354..10028)
DNA (675bp) protein (225aa)
Cytidylate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; Short=CK {ECO:0000256|HAMAP-Rule:MF_00238};; EC=2.7.4.25 {ECO:0000256|HAMAP-Rule:MF_00238};; Cytidine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
Cytidylate kinase n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2RCK3_9FIRM
cytidylate kinase
L3_130_000M1_scaffold_293_12
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10170..11417)
DNA (1248bp) protein (416aa)
Flavoprotein family protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2Q5K7_9FIRM
Flavoprotein family protein {ECO:0000313|EMBL:ERK51324.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
hypothetical protein
L3_130_000M1_scaffold_293_13
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11488..12435)
DNA (948bp) protein (316aa)
SIS domain protein n=2 Tax=Clostridiales RepID=U2PLA3_9FIRM
SIS domain protein {ECO:0000313|EMBL:ERK51325.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
N-acetylmannosamine kinase
L3_130_000M1_scaffold_293_14
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12547..13809)
DNA (1263bp) protein (421aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:50 RepID=R5TIF5_9FIRM
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:ERK51326.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
L3_130_000M1_scaffold_293_15
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14038..15771)
DNA (1734bp) protein (578aa)
Putative ferredoxin hydrogenase HydA1 n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2RKT9_9FIRM
Hydrogenase Fe-only {ECO:0000313|EMBL:CCZ65464.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
hydrogenase, Fe-only
L3_130_000M1_scaffold_293_16
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15765..17597)
DNA (1833bp) protein (611aa)
Pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Roseburia sp. CAG:50 RepID=R5TIH4_9FIRM
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:CCZ65465.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
L3_130_000M1_scaffold_293_17
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17966..18535)
DNA (570bp) protein (190aa)
Segregation and condensation protein B n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2Q5L2_9FIRM
Segregation and condensation protein B {ECO:0000256|HAMAP-Rule:MF_01804, ECO:0000256|SAAS:SAAS00086417}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
putative transcriptional regulator
L3_130_000M1_scaffold_293_18
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18542..19309)
DNA (768bp) protein (256aa)
Segregation and condensation protein A n=2 Tax=Clostridiales RepID=U2PLA9_9FIRM
Segregation and condensation protein A {ECO:0000256|HAMAP-Rule:MF_01805, ECO:0000256|SAAS:SAAS00093938}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
segregation and condensation protein A
L3_130_000M1_scaffold_293_19
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19470..20738
DNA (1269bp) protein (423aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:50 RepID=R5U8Z9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ65467.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
Serine-type D-Ala-D-Ala carboxypeptidase
L3_130_000M1_scaffold_293_20
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20809..21693)
DNA (885bp) protein (295aa)
Peptidase, S8/S53 family n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2RKU4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ65468.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
Subtilisin-like serine proteases
L3_130_000M1_scaffold_293_21
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21815..23899)
DNA (2085bp) protein (695aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
Polyribonucleotide nucleotidyltransferase n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2RCL5_9FIRM
polynucleotide phosphorylase/polyadenylase
L3_130_000M1_scaffold_293_22
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(24094..24360)
DNA (267bp) protein (89aa)
30S ribosomal protein S15 n=2 Tax=Clostridiales RepID=U2Q5L6_9FIRM
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
SSU ribosomal protein S15P
L3_130_000M1_scaffold_293_23
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24554..25480)
DNA (927bp) protein (309aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
FAD synthase n=1 Tax=Roseburia sp. CAG:50 RepID=R5U2X7_9FIRM
RibF; FAD synthase
L3_130_000M1_scaffold_293_24
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25490..26395)
DNA (906bp) protein (302aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
tRNA pseudouridine synthase B (EC:4.2.1.70 5.4.99.12)
tRNA pseudouridine synthase B n=1 Tax=Roseburia sp. CAG:50 RepID=R5U904_9FIRM
L3_130_000M1_scaffold_293_25
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26377..27366)
DNA (990bp) protein (330aa)
DHHA1 domain protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2RKK3_9FIRM
DHHA1 domain protein {ECO:0000313|EMBL:ERK51237.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
Exopolyphosphatase-related proteins
L3_130_000M1_scaffold_293_26
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27377..27745)
DNA (369bp) protein (123aa)
Ribosome-binding factor A n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2RCC1_9FIRM
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
RbfA; ribosome-binding factor A
L3_130_000M1_scaffold_293_27
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27763..30402)
DNA (2640bp) protein (880aa)
Translation initiation factor IF-2 n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2Q5B4_9FIRM
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
hypothetical protein
L3_130_000M1_scaffold_293_28
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30415..30735)
DNA (321bp) protein (107aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5U909_9FIRM
Ribosomal protein L7Ae {ECO:0000313|EMBL:ERK51240.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
ribosomal protein L7Ae/L30e/S12e/Gadd45
L3_130_000M1_scaffold_293_29
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30725..30994)
DNA (270bp) protein (90aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5TIH2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ65478.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
Predicted nucleic-acid-binding protein implicated in transcription termination
L3_130_000M1_scaffold_293_30
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30987..32216)
DNA (1230bp) protein (410aa)
Transcription termination factor NusA n=2 Tax=Clostridiales RepID=R5TQ74_9FIRM
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
transcription termination factor NusA
Displaying items 1-30 of 39 in total

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