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L3_130_000M1_scaffold_492

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_130_000M1_scaffold_492_1
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(44..463)
DNA (420bp) protein (140aa)
LysR substrate binding domain protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2RFB2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ65058.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
Transcriptional regulator
L3_130_000M1_scaffold_492_2
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

614..841
DNA (228bp) protein (76aa)
hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region (EC:4.2.1.32)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5THE3_9FIRM
Tartrate dehydratase subunit alpha {ECO:0000313|EMBL:ERK49425.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
L3_130_000M1_scaffold_492_3
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1060..2430
DNA (1371bp) protein (457aa)
Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) (EC:6.4.1.3)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:50 RepID=R5U7T6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ65062.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
L3_130_000M1_scaffold_492_4
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2451..2843
DNA (393bp) protein (131aa)
Oxaloacetate decarboxylase gamma chain {ECO:0000256|RuleBase:RU004278}; EC=4.1.1.3 {ECO:0000256|RuleBase:RU004278};; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
Oxaloacetate decarboxylase gamma chain n=1 Tax=Roseburia sp. CAG:50 RepID=R5THA9_9FIRM
sodium pump decarboxylases, gamma subunit
L3_130_000M1_scaffold_492_5
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2875..3246
DNA (372bp) protein (124aa)
Putative glutaconyl-CoA decarboxylase subunit gamma n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2PZA8_9FIRM
Putative glutaconyl-CoA decarboxylase subunit gamma {ECO:0000313|EMBL:ERK49421.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
pyruvate carboxylase subunit B
L3_130_000M1_scaffold_492_6
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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3261..4412
DNA (1152bp) protein (384aa)
sodium ion-translocating decarboxylase, beta subunit (EC:4.1.1.3 4.1.1.70)
Sodium ion-translocating decarboxylase beta subunit n=2 Tax=Clostridiales RepID=R5THE7_9FIRM
Sodium ion-translocating decarboxylase beta subunit {ECO:0000313|EMBL:CCZ65065.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
L3_130_000M1_scaffold_492_7
unknown

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4519..4632
DNA (114bp) protein (38aa)

This feature has no annotations

L3_130_000M1_scaffold_492_8
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4614..6023
DNA (1410bp) protein (470aa)
Pyruvate/oxaloacetate carboxyltransferase (EC:4.1.1.3)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5U1Q8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ65066.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
L3_130_000M1_scaffold_492_9
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6570..7934
DNA (1365bp) protein (455aa)
Transporter n=1 Tax=Roseburia sp. CAG:50 RepID=R5U7U1_9FIRM
Transporter {ECO:0000256|RuleBase:RU003732}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
Na+-dependent transporters of the SNF family
L3_130_000M1_scaffold_492_10
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8056..8559
DNA (504bp) protein (168aa)
Transcription elongation factor GreA n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2RFA1_9FIRM
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
transcription elongation factor GreA
L3_130_000M1_scaffold_492_11
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8623..9360)
DNA (738bp) protein (246aa)
UbiC transcription regulator-associated domain protein n=2 Tax=Clostridiales RepID=R5THF1_9FIRM
UbiC transcription regulator-associated domain protein {ECO:0000313|EMBL:CCZ65070.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
GntR family transcriptional regulator
L3_130_000M1_scaffold_492_12
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9348..10082)
DNA (735bp) protein (245aa)
UbiC transcription regulator-associated domain protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2Q0B0_9FIRM
UbiC transcription regulator-associated domain protein {ECO:0000313|EMBL:ERK49414.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
GntR family transcriptional regulator
L3_130_000M1_scaffold_492_13
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10458..11453
DNA (996bp) protein (332aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:50 RepID=R5TP15_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ65079.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
Predicted phosphosugar isomerases
L3_130_000M1_scaffold_492_14
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11527..12324
DNA (798bp) protein (266aa)
Sugar kinases, ribokinase family (EC:2.7.1.-)
Fructoselysine 6-kinase n=1 Tax=Roseburia sp. CAG:50 RepID=R5U1R6_9FIRM
Fructoselysine 6-kinase {ECO:0000313|EMBL:CCZ65081.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
L3_130_000M1_scaffold_492_15
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12437..15595)
DNA (3159bp) protein (1053aa)
Beta-galactosidase {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613}; EC=3.2.1.23 {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613};; Lactase {ECO:0000256|RuleBase:RU361154}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
Beta-galactosidase/beta-glucuronidase n=1 Tax=Roseburia sp. CAG:50 RepID=R5U7V3_9FIRM
beta-galactosidase/beta-glucuronidase
L3_130_000M1_scaffold_492_16
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15916..16341)
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:50 RepID=R5THC5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ65083.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
hypothetical protein
L3_130_000M1_scaffold_492_17
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16345..17262)
DNA (918bp) protein (306aa)
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_00001}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
aspartate carbamoyltransferase (EC:2.1.3.2)
Aspartate carbamoyltransferase n=2 Tax=Clostridiales RepID=R5TP18_9FIRM
L3_130_000M1_scaffold_492_18
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17664..19196
DNA (1533bp) protein (511aa)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; EC=6.3.2.13 {ECO:0000256|HAMAP-Rule:MF_00208};; Meso-A2pm-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; Meso-diaminopimelate-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
UDP-N-acetylmuramyl-tripeptide synthetases (EC:6.3.2.13)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2RF89_9FIRM
L3_130_000M1_scaffold_492_19
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19233..21482
DNA (2250bp) protein (750aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
Primosomal protein N n=1 Tax=Roseburia sp. CAG:50 RepID=R5U1R9_9FIRM
primosomal protein N (replication factor Y) - superfamily II helicase
L3_130_000M1_scaffold_492_20
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21594..22100
DNA (507bp) protein (169aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
Peptide deformylase n=2 Tax=Clostridiales RepID=U2RFL3_9FIRM
hypothetical protein
L3_130_000M1_scaffold_492_21
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22128..23066
DNA (939bp) protein (313aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043680}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase n=1 Tax=Roseburia sp. CAG:50 RepID=R5THD0_9FIRM
L3_130_000M1_scaffold_492_22
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23116..23811
DNA (696bp) protein (232aa)
Putative neutral zinc metallopeptidase n=2 Tax=Clostridiales RepID=U2PG61_9FIRM
Putative neutral zinc metallopeptidase {ECO:0000313|EMBL:ERK49510.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
putative Zn-dependent protease
L3_130_000M1_scaffold_492_23
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23798..25117
DNA (1320bp) protein (440aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00276898};; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
Ribosomal RNA small subunit methyltransferase B n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2Q0L1_9FIRM
Sun; tRNA and rRNA cytosine-C5-methylases
L3_130_000M1_scaffold_492_24
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25192..25974
DNA (783bp) protein (261aa)
23S rRNA m(2)A-2503 methyltransferase (EC:2.1.1.-)
Probable dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
Probable dual-specificity RNA methyltransferase RlmN n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GX28_9FIRM
Displaying 24 items

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