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L3_130_000M1_scaffold_515

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_130_000M1_scaffold_515_1
Coprococcus eutactus, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..310
DNA (309bp) protein (103aa)
Helix-turn-helix n=2 Tax=Lachnospiraceae RepID=D4LQ49_9FIRM
Helix-turn-helix.
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EDP27741.1}; TaxID=411474 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus eutactus ATCC 27759.;"
L3_130_000M1_scaffold_515_2
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(569..1756)
DNA (1188bp) protein (396aa)
Elongation factor Tu n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2P5V1_9FIRM
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
TufB; GTPase
L3_130_000M1_scaffold_515_3
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1860..3977)
DNA (2118bp) protein (706aa)
Elongation factor G n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2PP12_9FIRM
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
elongation factor G
L3_130_000M1_scaffold_515_4
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3993..4463)
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=1 Tax=Roseburia sp. CAG:50 RepID=R5TS38_9FIRM
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
30S ribosomal protein S7
L3_130_000M1_scaffold_515_5
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4662..5081)
DNA (420bp) protein (140aa)
30S ribosomal protein S12 n=2 Tax=Clostridiales RepID=U2QX48_9FIRM
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
RpsL; 30S ribosomal protein S12
L3_130_000M1_scaffold_515_6
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5374..9087)
DNA (3714bp) protein (1238aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=1 Tax=Roseburia sp. CAG:50 RepID=R5U4M2_9FIRM
L3_130_000M1_scaffold_515_7
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9106..12966)
DNA (3861bp) protein (1287aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2P5V6_9FIRM
L3_130_000M1_scaffold_515_8
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(13164..13541)
DNA (378bp) protein (126aa)
50S ribosomal protein L7/L12 n=2 Tax=Clostridiales RepID=R5TK41_9FIRM
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
rplL; 50S ribosomal protein L7/L12
L3_130_000M1_scaffold_515_9
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13624..14184)
DNA (561bp) protein (187aa)
50S ribosomal protein L10 n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2R5C6_9FIRM
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
50S ribosomal protein L10
L3_130_000M1_scaffold_515_10
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(14490..15182)
DNA (693bp) protein (231aa)
50S ribosomal protein L1 n=2 Tax=Clostridiales RepID=R5TK74_9FIRM
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
50S ribosomal protein L1
L3_130_000M1_scaffold_515_11
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(15240..15668)
DNA (429bp) protein (143aa)
50S ribosomal protein L11 n=2 Tax=Clostridiales RepID=R5U4M7_9FIRM
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
50S ribosomal protein L11
L3_130_000M1_scaffold_515_12
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15717..16232)
DNA (516bp) protein (172aa)
Transcription termination/antitermination protein NusG n=2 Tax=Clostridiales RepID=R5UAW8_9FIRM
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
hypothetical protein
L3_130_000M1_scaffold_515_13
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16253..16462)
DNA (210bp) protein (70aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5TK45_9FIRM
Preprotein translocase, SecE subunit {ECO:0000313|EMBL:ERK45886.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
protein translocase subunit secE/sec61 gamma
L3_130_000M1_scaffold_515_14
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(16486..16635)
DNA (150bp) protein (50aa)
50S ribosomal protein L33 n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2R5D0_9FIRM
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
hypothetical protein
L3_130_000M1_scaffold_515_15
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16863..19571)
DNA (2709bp) protein (903aa)
LPXTG-motif protein cell wall anchor domain protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2QHT0_9FIRM
LPXTG-motif protein cell wall anchor domain protein {ECO:0000313|EMBL:ERK40863.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
Cna protein B-type domain.
L3_130_000M1_scaffold_515_16
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19589..20446)
DNA (858bp) protein (286aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5TMZ5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ64709.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
polysaccharide lyase family 1-like pectate lyase
L3_130_000M1_scaffold_515_17
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20421..21341)
DNA (921bp) protein (307aa)
LPXTG-site transpeptidase (Sortase) family protein n=2 Tax=Clostridiales RepID=R5TG92_9FIRM
Sortase family protein {ECO:0000313|EMBL:ERK40861.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
LPXTG-site transpeptidase (sortase) family protein
L3_130_000M1_scaffold_515_18
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21335..22174)
DNA (840bp) protein (280aa)
Sortase family protein n=2 Tax=Clostridiales RepID=U2NS56_9FIRM
Sortase family protein {ECO:0000313|EMBL:ERK40860.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
LPXTG-site transpeptidase (sortase) family protein
L3_130_000M1_scaffold_515_19
Coprococcus catus, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22207..24432)
DNA (2226bp) protein (742aa)
Putative uncharacterized protein n=1 Tax=Coprococcus catus GD/7 RepID=D4J914_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK80835.1}; TaxID=717962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus catus GD/7.;"
L3_130_000M1_scaffold_515_20
unknown

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comp(24685..24783)
DNA (99bp) protein (33aa)

This feature has no annotations

Displaying 20 items

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