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L3_130_000M1_scaffold_516

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_130_000M1_scaffold_516_1
Roseburia sp. CAG:303, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(186..1088)
DNA (903bp) protein (301aa)
Transcriptional regulator LysR family n=1 Tax=Roseburia sp. CAG:303 RepID=R7IUF8_9FIRM
Transcriptional regulator LysR family {ECO:0000313|EMBL:CDE55190.1}; TaxID=1262944 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:303.;"
LysR family transcriptional regulator
L3_130_000M1_scaffold_516_2
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1300..2361)
DNA (1062bp) protein (354aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2R4Q8_9FIRM
integral membrane sensor signal transduction histidine kinase
L3_130_000M1_scaffold_516_3
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2358..3029)
DNA (672bp) protein (224aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5U4Q6_9FIRM
Putative response regulator protein GraR {ECO:0000313|EMBL:ERK45663.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
hypothetical protein
L3_130_000M1_scaffold_516_4
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3430..4998
DNA (1569bp) protein (523aa)
Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes (EC:2.7.8.-)
Phospholipase D domain protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2PPI1_9FIRM
Phospholipase D domain protein {ECO:0000313|EMBL:ERK45664.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
L3_130_000M1_scaffold_516_5
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5101..6054
DNA (954bp) protein (318aa)
Cation diffusion facilitator family transporter n=2 Tax=Clostridiales RepID=R5TK73_9FIRM
Cation diffusion facilitator family transporter {ECO:0000313|EMBL:ERK45665.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
cation diffusion facilitator family transporter
L3_130_000M1_scaffold_516_6
Coprococcus catus, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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6063..6713
DNA (651bp) protein (217aa)
Sugar fermentation stimulation protein homolog n=1 Tax=Coprococcus catus GD/7 RepID=D4J4H5_9FIRM
sugar fermentation stimulation protein
Sugar fermentation stimulation protein homolog {ECO:0000256|HAMAP-Rule:MF_00095}; TaxID=717962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus catus GD/7.;"
L3_130_000M1_scaffold_516_7
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6706..9270)
DNA (2565bp) protein (855aa)
Beta-glucosidase-related glycosidases (EC:3.2.1.21)
Beta-glucosidase n=1 Tax=Roseburia sp. CAG:50 RepID=R5TS83_9FIRM
Beta-glucosidase {ECO:0000313|EMBL:CCZ66114.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
L3_130_000M1_scaffold_516_8
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9359..9997)
DNA (639bp) protein (213aa)
Uracil phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084530}; EC=2.4.2.9 {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084480};; UMP pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_01218}; UPRTase {ECO:0000256|HAMAP-Rule:MF_01218}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
uracil phosphoribosyltransferase (EC:2.4.2.9)
Uracil phosphoribosyltransferase n=1 Tax=Roseburia sp. CAG:50 RepID=R5TKA7_9FIRM
L3_130_000M1_scaffold_516_9
unknown

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comp(10068..10190)
DNA (123bp) protein (41aa)

This feature has no annotations

L3_130_000M1_scaffold_516_10
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10345..11697
DNA (1353bp) protein (451aa)
Putative uracil permease n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2QWI9_9FIRM
Putative uracil permease {ECO:0000313|EMBL:ERK45668.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
uracil-xanthine permease
L3_130_000M1_scaffold_516_11
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11965..13062)
DNA (1098bp) protein (366aa)
Iron compound ABC transporter ATP-binding protein n=2 Tax=Clostridiales RepID=R5UB03_9FIRM
Iron compound ABC transporter ATP-binding protein {ECO:0000313|EMBL:CCZ66117.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
ferric enterobactin transport ATP-binding protein fepC
L3_130_000M1_scaffold_516_12
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13059..14060)
DNA (1002bp) protein (334aa)
ABC-type Fe3+-siderophore transport system permease component n=2 Tax=Clostridiales RepID=R5TK79_9FIRM
Iron chelate uptake ABC transporter, FeCT family, permease protein {ECO:0000313|EMBL:ERK45622.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
ABC-type Fe3+-siderophore transport system, permease component
L3_130_000M1_scaffold_516_13
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14081..15619)
DNA (1539bp) protein (513aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=U2QWE8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK45623.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
ABC-type Fe3+-hydroxamate transport system, periplasmic component
L3_130_000M1_scaffold_516_14
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15629..17233)
DNA (1605bp) protein (535aa)
Cobalamin biosynthesis protein CbiK Co2+ chelatase n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AY06_9FIRM
Cobalamin biosynthesis protein CbiK Co2+ chelatase {ECO:0000313|EMBL:CDA55930.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Cobalamin biosynthesis protein CbiK, Co2+ chelatase
L3_130_000M1_scaffold_516_15
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17807..19585)
DNA (1779bp) protein (593aa)
Uncharacterized protein n=1 Tax=Eubacterium ramulus ATCC 29099 PF10_9FIRM">RepID=U2PF10_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK42711.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
hypothetical protein
L3_130_000M1_scaffold_516_16
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19582..20772)
DNA (1191bp) protein (397aa)
Ser/Thr phosphatase family protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2QVE2_9FIRM
Ser/Thr phosphatase family protein {ECO:0000313|EMBL:ERK42712.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
DNA repair exonuclease
L3_130_000M1_scaffold_516_17
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21146..21694)
DNA (549bp) protein (183aa)
AbrB family transcriptional regulator n=1 Tax=Roseburia sp. CAG:50 RepID=R5TLQ8_9FIRM
AbrB family transcriptional regulator {ECO:0000313|EMBL:CCZ64289.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
AbrB family transcriptional regulator
L3_130_000M1_scaffold_516_18
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21903..23252)
DNA (1350bp) protein (450aa)
MATE efflux family protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2PG27_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:ERK42714.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
MATE family multidrug resistance protein
L3_130_000M1_scaffold_516_19
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23420..24484)
DNA (1065bp) protein (355aa)
Ribosomal RNA small subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_01007}; EC=2.1.1.199 {ECO:0000256|HAMAP-Rule:MF_01007};; 16S rRNA m(4)C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01007}; rRNA (cytosine-N(4)-)-methyltransferase RsmH {ECO:0000256|HAMAP-Rule:MF_01007}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
S-adenosyl-methyltransferase MraW (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase H n=2 Tax=Clostridiales RepID=R5TZ81_9FIRM
Displaying 19 items

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