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L3_130_000M1_scaffold_556

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_130_000M1_scaffold_556_1
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..894)
DNA (894bp) protein (298aa)
YhgE/Pip domain protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2Q484_9FIRM
YhgE/Pip domain protein {ECO:0000313|EMBL:ERK50829.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
hypothetical protein
L3_130_000M1_scaffold_556_2
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(891..3443)
DNA (2553bp) protein (851aa)
YhgE/Pip domain protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2PJU4_9FIRM
YhgE/Pip domain protein {ECO:0000313|EMBL:ERK50830.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
YhgE/Pip N-terminal domain/YhgE/Pip C-terminal domain
L3_130_000M1_scaffold_556_3
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3877..4566)
DNA (690bp) protein (230aa)
Transcriptional regulator, GntR family n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2Q377_9FIRM
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ERK50831.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
Transcriptional regulators
L3_130_000M1_scaffold_556_4
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4733..5950)
DNA (1218bp) protein (406aa)
Peptidase T {ECO:0000256|SAAS:SAAS00064331}; EC=3.-.-.- {ECO:0000256|SAAS:SAAS00279025};; EC=3.4.11.- {ECO:0000256|SAAS:SAAS00275860};; EC=3.4.11.4 {ECO:0000256|SAAS:SAAS00064282};; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
peptidase T (EC:3.4.11.4)
Peptidase T n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2RJE0_9FIRM
L3_130_000M1_scaffold_556_5
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6180..7910)
DNA (1731bp) protein (577aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:50 RepID=R5TPD2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ65219.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
periplasmic murein peptide-binding protein
L3_130_000M1_scaffold_556_6
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8024..9061)
DNA (1038bp) protein (346aa)
Oligopeptide/dipeptide ABC transporter ATP-binding protein domain n=2 Tax=Clostridiales RepID=R5THS1_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ERK50834.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain
L3_130_000M1_scaffold_556_7
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9054..10118)
DNA (1065bp) protein (355aa)
Oligopeptide ABC transporter, ATP-binding protein OppD n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2PJU9_9FIRM
Oligopeptide ABC transporter, ATP-binding protein OppD {ECO:0000313|EMBL:ERK50835.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
oligopeptide/dipeptide ABC transporter ATPase
L3_130_000M1_scaffold_556_8
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10136..11482)
DNA (1347bp) protein (449aa)
ABC transporter, permease protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2Q381_9FIRM
ABC transporter, permease protein {ECO:0000313|EMBL:ERK50836.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
oligopeptide transport system permease OppC
L3_130_000M1_scaffold_556_9
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11485..12396)
DNA (912bp) protein (304aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5THN9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ65223.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
binding-protein-dependent transport system inner membrane protein
L3_130_000M1_scaffold_556_10
unknown

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12743..12973
DNA (231bp) protein (77aa)

This feature has no annotations

L3_130_000M1_scaffold_556_11
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13072..14094
DNA (1023bp) protein (341aa)
Cellulase M and related proteins n=1 Tax=Roseburia sp. CAG:50 RepID=R5TPD6_9FIRM
Cellulase M and related proteins {ECO:0000313|EMBL:CCZ65224.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
Cellulase M and related proteins
L3_130_000M1_scaffold_556_12
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14229..15059)
DNA (831bp) protein (277aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:50 RepID=R5U272_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ65226.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
bglG; cryptic beta-glucoside bgl operon antiterminator
L3_130_000M1_scaffold_556_13
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15312..16940)
DNA (1629bp) protein (543aa)
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000256|PIRNR:PIRNR000732}; EC=2.7.3.9 {ECO:0000256|PIRNR:PIRNR000732};; Phosphotransferase system, enzyme I {ECO:0000256|PIRNR:PIRNR000732}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
phosphoenolpyruvate--protein phosphotransferase (EC:2.7.3.9)
Phosphoenolpyruvate-protein phosphotransferase n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2Q340_9FIRM
L3_130_000M1_scaffold_556_14
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17052..19208)
DNA (2157bp) protein (719aa)
Putative PTS system glucose-specific EIICBA component n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2RJ96_9FIRM
Putative PTS system glucose-specific EIICBA component {ECO:0000313|EMBL:ERK50792.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
PTS system IIA component, Glc family (TC 4.A.1)/PTS system IIB component, Glc family (TC 4.A.1)/PTS system IIC component, Glc family (TC 4.A.1)
L3_130_000M1_scaffold_556_15
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19524..20060)
DNA (537bp) protein (179aa)
Signal peptidase I n=2 Tax=Clostridiales RepID=R5U3Z1_9FIRM
Signal peptidase I {ECO:0000313|EMBL:ERK50793.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
hypothetical protein
L3_130_000M1_scaffold_556_16
unknown

Not on your lists

comp(20057..20179)
DNA (123bp) protein (41aa)

This feature has no annotations

L3_130_000M1_scaffold_556_17
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20226..21233)
DNA (1008bp) protein (336aa)
Uncharacterized protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2PJR4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK50795.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
hypothetical protein
L3_130_000M1_scaffold_556_18
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21235..22035)
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2Q345_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK50796.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
hypothetical protein
L3_130_000M1_scaffold_556_19
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22050..22799)
DNA (750bp) protein (250aa)
Uncharacterized protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2RJA1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK50797.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
hypothetical protein
L3_130_000M1_scaffold_556_20
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22813..23205)
DNA (393bp) protein (131aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5U5H0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK50798.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
hypothetical protein
Displaying 20 items

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