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L3_130_000M1_scaffold_691

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_130_000M1_scaffold_691_1
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3..1388)
DNA (1386bp) protein (462aa)
UPF0313 protein BN683_01562 n=1 Tax=Roseburia sp. CAG:50 RepID=R5TMG0_9FIRM
UPF0313 protein BN683_01562 {ECO:0000256|HAMAP-Rule:MF_01251}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
hypothetical protein
L3_130_000M1_scaffold_691_2
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1385..2059)
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:50 RepID=R5TFQ8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ64493.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
hypothetical protein
L3_130_000M1_scaffold_691_3
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2056..2790)
DNA (735bp) protein (245aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
ribosomal small subunit pseudouridine synthase A (EC:5.4.99.- 5.4.99.12)
Pseudouridine synthase n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2PIW9_9FIRM
L3_130_000M1_scaffold_691_4
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2831..3490)
DNA (660bp) protein (220aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5TZU9_9FIRM
Peptidase, M23 family {ECO:0000313|EMBL:ERK50469.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
Membrane proteins related to metalloendopeptidases
L3_130_000M1_scaffold_691_5
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3519..4478
DNA (960bp) protein (320aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:50 RepID=R5TFQ3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ64490.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
nucleoside recognition domain-containing protein
L3_130_000M1_scaffold_691_6
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4503..5150)
DNA (648bp) protein (216aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5TMF2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK50467.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
hypothetical protein
L3_130_000M1_scaffold_691_7
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5166..5615)
DNA (450bp) protein (150aa)
Phosphopantetheine adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109024}; EC=2.7.7.3 {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109037};; Dephospho-CoA pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00151}; Pantetheine-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
Phosphopantetheine adenylyltransferase n=2 Tax=Clostridiales RepID=R5TFQ2_9FIRM
pantetheine-phosphate adenylyltransferase
L3_130_000M1_scaffold_691_8
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5685..6239)
DNA (555bp) protein (185aa)
RNA methyltransferase, RsmD family n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2PIW5_9FIRM
RNA methyltransferase, RsmD family {ECO:0000313|EMBL:ERK50465.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
N6-adenine-specific methylase
L3_130_000M1_scaffold_691_9
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6294..6857)
DNA (564bp) protein (188aa)
Phosphatidylglycerophosphate synthase n=2 Tax=Clostridiales RepID=R5TZU5_9FIRM
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:ERK50464.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
hypothetical protein
L3_130_000M1_scaffold_691_10
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6877..8199)
DNA (1323bp) protein (441aa)
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865};; EC=2.8.4.4 {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00179441};; Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865}; Ribosome maturation factor RimO {ECO:0000256|HAMAP-Rule:MF_01865}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
SSU ribosomal protein S12P methylthiotransferase (EC:1.3.1.74 2.-.-.-)
Ribosomal protein S12 methylthiotransferase RimO n=2 Tax=Clostridiales RepID=R5TFP7_9FIRM
L3_130_000M1_scaffold_691_11
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8316..8576)
DNA (261bp) protein (87aa)
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
DNA-directed RNA polymerase subunit omega n=2 Tax=Clostridiales RepID=R5TME4_9FIRM
hypothetical protein
L3_130_000M1_scaffold_691_12
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8573..9214)
DNA (642bp) protein (214aa)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_00328}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
Guanylate kinase n=2 Tax=Clostridiales RepID=R5TFP6_9FIRM
Gmk; guanylate kinase
L3_130_000M1_scaffold_691_13
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9230..9481)
DNA (252bp) protein (84aa)
UPF0296 protein HMPREF0373_00722 n=2 Tax=Clostridiales RepID=U2PIW1_9FIRM
UPF0296 protein HMPREF0373_00722 {ECO:0000256|HAMAP-Rule:MF_01503}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
hypothetical protein
L3_130_000M1_scaffold_691_14
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9493..10371)
DNA (879bp) protein (293aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5TZU0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ64481.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
conserved hypothetical protein TIGR00255
L3_130_000M1_scaffold_691_15
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10465..12420)
DNA (1956bp) protein (652aa)
MATE efflux family protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2RA58_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:ERK50458.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
putative efflux protein, MATE family
L3_130_000M1_scaffold_691_16
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12398..13192)
DNA (795bp) protein (265aa)
ABC transporter, ATP-binding protein n=2 Tax=Dorea RepID=A6BIE7_9FIRM
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CDE17052.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component
L3_130_000M1_scaffold_691_17
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13336..13992
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BIE8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM62489.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
hypothetical protein
L3_130_000M1_scaffold_691_18
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14139..15515
DNA (1377bp) protein (459aa)
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211019}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211017};; Arginosuccinase {ECO:0000256|HAMAP-Rule:MF_00006}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
argininosuccinate lyase (EC:4.3.2.1)
Argininosuccinate lyase n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BIE9_9FIRM
L3_130_000M1_scaffold_691_19
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15543..16628
DNA (1086bp) protein (362aa)
aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) (EC:1.2.1.11)
Aspartate-semialdehyde dehydrogenase n=2 Tax=Dorea RepID=A6BIF0_9FIRM
Aspartate-semialdehyde dehydrogenase {ECO:0000313|EMBL:CDE17049.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
L3_130_000M1_scaffold_691_20
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17014..18708
DNA (1695bp) protein (565aa)
Polyphosphate kinase {ECO:0000256|RuleBase:RU003800, ECO:0000256|SAAS:SAAS00008191}; EC=2.7.4.1 {ECO:0000256|RuleBase:RU003800, ECO:0000256|SAAS:SAAS00008191};; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
Polyphosphate kinase (EC:2.7.4.1)
Polyphosphate kinase n=2 Tax=Dorea RepID=A6BIF1_9FIRM
Displaying 20 items

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