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L3_130_000M1_scaffold_839

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_130_000M1_scaffold_839_1
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..642)
DNA (642bp) protein (214aa)
stage IV sporulation protein B (EC:3.4.21.116)
SpoIVB peptidase n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2R0Z5_9FIRM
SpoIVB peptidase {ECO:0000313|EMBL:ERK47288.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
L3_130_000M1_scaffold_839_2
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1064..2740)
DNA (1677bp) protein (559aa)
DNA repair protein RecN n=1 Tax=Roseburia sp. CAG:50 RepID=R5TH11_9FIRM
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
DNA replication and repair protein RecN
L3_130_000M1_scaffold_839_3
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2759..3211)
DNA (453bp) protein (151aa)
Arginine repressor n=2 Tax=Clostridiales RepID=R5U7F6_9FIRM
Arginine repressor {ECO:0000256|HAMAP-Rule:MF_00173}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
transcriptional regulator, ArgR family
L3_130_000M1_scaffold_839_4
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3307..4191)
DNA (885bp) protein (295aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
Predicted sugar kinase (EC:2.7.1.23)
Probable inorganic polyphosphate/ATP-NAD kinase n=2 Tax=Clostridiales RepID=R5U1H1_9FIRM
L3_130_000M1_scaffold_839_5
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4172..4975)
DNA (804bp) protein (268aa)
Ribosomal RNA large subunit methyltransferase J n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2R0Z1_9FIRM
Ribosomal RNA large subunit methyltransferase J {ECO:0000313|EMBL:ERK47283.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
hemolysin TlyA family protein
L3_130_000M1_scaffold_839_6
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5013..6878)
DNA (1866bp) protein (622aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Roseburia sp. CAG:50 RepID=R5TNP3_9FIRM
hypothetical protein
L3_130_000M1_scaffold_839_7
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6888..7775)
DNA (888bp) protein (296aa)
Putative geranyltranstransferase n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2PT34_9FIRM
Putative geranyltranstransferase {ECO:0000313|EMBL:ERK47281.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
geranyltranstransferase
L3_130_000M1_scaffold_839_8
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7790..8041)
DNA (252bp) protein (84aa)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclease VII small subunit {ECO:0000256|HAMAP-Rule:MF_00337}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
Exodeoxyribonuclease 7 small subunit n=2 Tax=Clostridiales RepID=R5U7E7_9FIRM
exodeoxyribonuclease VII small subunit XseB
L3_130_000M1_scaffold_839_9
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8114..9325)
DNA (1212bp) protein (404aa)
Exodeoxyribonuclease 7 large subunit {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195504}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195506};; Exodeoxyribonuclease VII large subunit {ECO:0000256|HAMAP-Rule:MF_00378}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
exodeoxyribonuclease VII, large subunit (EC:3.1.11.6)
Exodeoxyribonuclease 7 large subunit n=1 Tax=Roseburia sp. CAG:50 RepID=R5U1G6_9FIRM
L3_130_000M1_scaffold_839_10
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9322..9717)
DNA (396bp) protein (132aa)
N utilization substance protein B homolog n=2 Tax=Clostridiales RepID=U2R0Y7_9FIRM
N utilization substance protein B homolog {ECO:0000256|HAMAP-Rule:MF_00073, ECO:0000256|SAAS:SAAS00057003}; Short=Protein NusB {ECO:0000256|HAMAP-Rule:MF_00073};; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
NusB antitermination factor
L3_130_000M1_scaffold_839_11
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9784..10167)
DNA (384bp) protein (128aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5TNN7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ64964.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
hypothetical protein
L3_130_000M1_scaffold_839_12
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10250..11722)
DNA (1473bp) protein (491aa)
Chromate transport protein n=1 Tax=Roseburia sp. CAG:50 RepID=R5TGZ8_9FIRM
Chromate transport protein {ECO:0000313|EMBL:CCZ64963.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
hypothetical protein
L3_130_000M1_scaffold_839_13
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11847..13859)
DNA (2013bp) protein (671aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
DNA ligase n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2P9S1_9FIRM
DNA ligase
L3_130_000M1_scaffold_839_14
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13986..14750)
DNA (765bp) protein (255aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
Pseudouridine synthase n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2PU19_9FIRM
pseudouridylate synthase
L3_130_000M1_scaffold_839_15
unknown

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comp(14795..14926)
DNA (132bp) protein (44aa)

This feature has no annotations

Displaying 15 items

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